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SMTL ID : 1fnt.1

CRYSTAL STRUCTURE OF THE 20S PROTEASOME FROM YEAST IN COMPLEX WITH THE PROTEASOME ACTIVATOR PA26 FROM TRYPANOSOME BRUCEI AT 3.2 ANGSTROMS RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-14-mer

Ligands

14 x MG: MAGNESIUM ION(Non-covalent)

MG.1:	2 residues within 4Å: Chain G: S.12, N.126 No protein-ligand interaction detected (PLIP)
MG.2:	4 residues within 4Å: Chain H: I.163, D.166, G.167, S.169 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:I.163, H:D.166, H:S.169
MG.3:	6 residues within 4Å: Chain 0: D.222 Chain I: I.163, W.164, D.166, L.167, S.169 4 PLIP interactions: 2 interactions with chain I, 2 interactions with chain 0 Metal complexes: I:I.163, I:D.166, 0:D.222, 0:D.222
MG.4:	5 residues within 4Å: Chain J: A.175, D.176, D.178, S.181, D.205 1 PLIP interactions: 1 interactions with chain J Metal complexes: J:D.178
MG.5:	3 residues within 4Å: Chain J: G.140, T.141, S.143 1 PLIP interactions: 1 interactions with chain J Metal complexes: J:G.140
MG.6:	7 residues within 4Å: Chain L: A.165, H.166, R.167, D.168, A.169, S.171 Chain X: D.205 3 PLIP interactions: 2 interactions with chain L, 1 interactions with chain X Metal complexes: L:A.165, L:D.168, X:D.205
MG.7:	4 residues within 4Å: Chain E: E.105 Chain M: S.85, S.88, E.116 3 PLIP interactions: 1 interactions with chain E, 2 interactions with chain M Metal complexes: E:E.105, M:S.85, M:S.88
MG.8:	2 residues within 4Å: Chain U: S.12, N.126 No protein-ligand interaction detected (PLIP)
MG.9:	6 residues within 4Å: Chain V: R.19, I.163, D.166, G.167, S.169, G.170 1 PLIP interactions: 1 interactions with chain V Metal complexes: V:S.169
MG.10:	6 residues within 4Å: Chain M: D.222 Chain W: I.163, W.164, D.166, L.167, S.169 4 PLIP interactions: 2 interactions with chain M, 2 interactions with chain W Metal complexes: M:D.222, M:D.222, W:I.163, W:D.166
MG.11:	6 residues within 4Å: Chain X: A.175, D.176, D.178, A.179, S.181, D.205 2 PLIP interactions: 2 interactions with chain X Metal complexes: X:D.178, X:S.181
MG.12:	2 residues within 4Å: Chain X: G.140, S.143 1 PLIP interactions: 1 interactions with chain X Metal complexes: X:G.140
MG.13:	7 residues within 4Å: Chain J: D.205 Chain Z: A.165, H.166, R.167, D.168, A.169, S.171 4 PLIP interactions: 3 interactions with chain Z, 1 interactions with chain J Metal complexes: Z:A.165, Z:D.168, Z:S.171, J:D.205
MG.14:	3 residues within 4Å: Chain 0: S.85, S.88 Chain S: E.105 3 PLIP interactions: 1 interactions with chain S, 2 interactions with chain 0 Metal complexes: S:E.105, 0:S.85, 0:S.88

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Whitby, F.G. et al., Structural basis for the activation of 20S proteasomes by 11S regulators. Nature (2000)

Release Date

2001-04-11

Peptides

PROTEASOME COMPONENT C7-ALPHA: AO
PROTEASOME COMPONENT Y7: BP
PROTEASOME COMPONENT Y13: CQ
PROTEASOME COMPONENT PRE6: DR
PROTEASOME COMPONENT PUP2: ES
PROTEASOME COMPONENT PRE5: FT
PROTEASOME COMPONENT C1: GU
PROTEASOME COMPONENT PRE3: HV
PROTEASOME COMPONENT PUP1: IW
PROTEASOME COMPONENT PUP3: JX
PROTEASOME COMPONENT C11: KY
PROTEASOME COMPONENT PRE2: LZ
PROTEASOME COMPONENT C5: M0
PROTEASOME COMPONENT PRE4: N1
PROTEASOME ACTIVATOR PROTEIN PA26: 23456789abcdef

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

O
O

B
B

P
P

C
C

Q
Q

D
D

R
R

E
E

S
S

F
F

T
T

G
G

U
U

H
H

V
V

I
I

W
W

J
J

X
X

K
K

Y
Y

L
L

Z
Z

M
M

0
a

N
N

1
b

2
c

3
d

4
e

5
f

6
g

7
h

8
i

9
j

a
k

b
l

c
m

d
n

e
o

f
p

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

PROTEASOME COMPONENT C7-ALPHA

Toggle Identical (AO)

PROTEASOME COMPONENT Y7

Toggle Identical (BP)

PROTEASOME COMPONENT Y13

Toggle Identical (CQ)

PROTEASOME COMPONENT PRE6

Toggle Identical (DR)

PROTEASOME COMPONENT PUP2

Toggle Identical (ES)

PROTEASOME COMPONENT PRE5

Toggle Identical (FT)

PROTEASOME COMPONENT C1

Toggle Identical (GU)

PROTEASOME COMPONENT PRE3

Toggle Identical (HV)

PROTEASOME COMPONENT PUP1

Toggle Identical (IW)

PROTEASOME COMPONENT PUP3

Toggle Identical (JX)

PROTEASOME COMPONENT C11

Toggle Identical (KY)

PROTEASOME COMPONENT PRE2

Toggle Identical (LZ)

PROTEASOME COMPONENT C5

Toggle Identical (M0)

PROTEASOME COMPONENT PRE4

Toggle Identical (N1)

PROTEASOME ACTIVATOR PROTEIN PA26

Toggle Identical (23456789abcdef)

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Background

Transparent

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