4g4s.1 | SWISS-MODEL Template Library

Modelling
Repository
Tools
Documentation
Log in
Create Account

SMTL ID : 4g4s.1

Structure of Proteasome-Pba1-Pba2 Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer

Ligands

16 x MG: MAGNESIUM ION(Non-covalent)

MG.1:	5 residues within 4Å: Chain A: T.17, Y.128, R.131, A.132, M.134 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.17, A:Y.128, A:R.131, A:M.134, H₂O.3
MG.2:	4 residues within 4Å: Chain 3: L.34 Chain H: I.163, D.166, S.169 4 PLIP interactions: 3 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:I.163, H:D.166, H:S.169, H₂O.15
MG.3:	7 residues within 4Å: Chain 2: D.222 Chain I: R.19, G.162, I.163, D.166, L.167, S.169 5 PLIP interactions: 3 interactions with chain I, 1 interactions with chain 2, 1 Ligand-Water interactions Metal complexes: I:I.163, I:D.166, I:S.169, 2:D.222, H₂O.16
MG.4:	3 residues within 4Å: Chain J: A.175, D.178, S.181 4 PLIP interactions: 3 interactions with chain J, 1 Ligand-Water interactions Metal complexes: J:A.175, J:D.178, J:S.181, H₂O.18
MG.5:	2 residues within 4Å: Chain J: G.140, S.143 4 PLIP interactions: 2 interactions with chain J, 2 Ligand-Water interactions Metal complexes: J:G.140, J:S.143, H₂O.20, H₂O.20
MG.7:	6 residues within 4Å: Chain L: R.19, A.165, D.168, A.169, S.171 Chain Z: D.205 4 PLIP interactions: 3 interactions with chain L, 1 interactions with chain Z Metal complexes: L:A.165, L:D.168, L:S.171, Z:D.205
MG.8:	6 residues within 4Å: Chain M: R.28, T.192, H.195, I.196, V.198, D.222 4 PLIP interactions: 3 interactions with chain M, 1 Ligand-Water interactions Metal complexes: M:T.192, M:H.195, M:V.198, H₂O.26
MG.9:	3 residues within 4Å: Chain E: E.106 Chain M: S.85, S.88 6 PLIP interactions: 2 interactions with chain M, 1 interactions with chain E, 3 Ligand-Water interactions Metal complexes: M:S.85, M:S.88, E:E.106, H₂O.26, H₂O.26, H₂O.27
MG.10:	5 residues within 4Å: Chain Q: T.17, Y.128, R.131, A.132, M.134 5 PLIP interactions: 4 interactions with chain Q, 1 Ligand-Water interactions Metal complexes: Q:T.17, Q:Y.128, Q:R.131, Q:M.134, H₂O.35
MG.11:	4 residues within 4Å: Chain N: L.34 Chain X: I.163, D.166, S.169 4 PLIP interactions: 3 interactions with chain X, 1 Ligand-Water interactions Metal complexes: X:I.163, X:D.166, X:S.169, H₂O.48
MG.12:	7 residues within 4Å: Chain M: D.222 Chain Y: R.19, G.162, I.163, D.166, L.167, S.169 5 PLIP interactions: 3 interactions with chain Y, 1 interactions with chain M, 1 Ligand-Water interactions Metal complexes: Y:I.163, Y:D.166, Y:S.169, M:D.222, H₂O.49
MG.13:	3 residues within 4Å: Chain Z: A.175, D.178, S.181 4 PLIP interactions: 3 interactions with chain Z, 1 Ligand-Water interactions Metal complexes: Z:A.175, Z:D.178, Z:S.181, H₂O.51
MG.14:	2 residues within 4Å: Chain Z: G.140, S.143 4 PLIP interactions: 2 interactions with chain Z, 2 Ligand-Water interactions Metal complexes: Z:G.140, Z:S.143, H₂O.52, H₂O.53
MG.16:	6 residues within 4Å: Chain 1: R.19, A.165, D.168, A.169, S.171 Chain J: D.205 4 PLIP interactions: 3 interactions with chain 1, 1 interactions with chain J Metal complexes: 1:A.165, 1:D.168, 1:S.171, J:D.205
MG.17:	6 residues within 4Å: Chain 2: R.28, T.192, H.195, I.196, V.198, D.222 4 PLIP interactions: 3 interactions with chain 2, 1 Ligand-Water interactions Metal complexes: 2:T.192, 2:H.195, 2:V.198, H₂O.58
MG.18:	3 residues within 4Å: Chain 2: S.85, S.88 Chain U: E.106 6 PLIP interactions: 2 interactions with chain 2, 1 interactions with chain U, 3 Ligand-Water interactions Metal complexes: 2:S.85, 2:S.88, U:E.106, H₂O.58, H₂O.59, H₂O.60

2 x LDZ: N-[(benzyloxy)carbonyl]-L-leucyl-N-[(2S)-4-methyl-1-oxopentan-2-yl]-L-leucinamide(Non-covalent)

LDZ.6:	14 residues within 4Å: Chain L: T.1, R.19, A.20, T.21, A.27, K.33, M.45, A.46, G.47, G.48, A.49 Chain M: P.104, D.126, P.127 12 PLIP interactions: 9 interactions with chain L, 3 interactions with chain M Hydrophobic interactions: L:A.20, L:A.27, L:M.45, M:P.104, M:P.127 Hydrogen bonds: L:T.21, L:T.21, L:G.47, L:G.47, L:A.49, M:D.126 Water bridges: L:A.50
LDZ.15:	14 residues within 4Å: Chain 1: T.1, R.19, A.20, T.21, A.27, K.33, M.45, A.46, G.47, G.48, A.49 Chain 2: P.104, D.126, P.127 14 PLIP interactions: 4 interactions with chain 2, 10 interactions with chain 1 Hydrophobic interactions: 2:P.104, 2:P.127, 1:A.20, 1:A.27, 1:M.45 Hydrogen bonds: 2:D.126, 2:D.126, 1:T.1, 1:T.21, 1:T.21, 1:G.47, 1:G.47, 1:A.49 Water bridges: 1:A.50

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Stadtmueller, B.M. et al., Structure of a Proteasome Pba1-Pba2 Complex: IMPLICATIONS FOR PROTEASOME ASSEMBLY, ACTIVATION, AND BIOLOGICAL FUNCTION. J.Biol.Chem. (2012)

Release Date

2012-09-05

Peptides

Proteasome component C7-alpha: AQ
Proteasome component Y7: BR
Proteasome component Y13: CS
Proteasome component PRE6: DT
Proteasome component PUP2: EU
Proteasome component PRE5: FV
Proteasome component C1: GW
Proteasome component PRE3: HX
Proteasome component PUP1: IY
Proteasome component PUP3: JZ
Proteasome component C11: K0
Proteasome component PRE2: L1
Proteasome component C5: M2
Proteasome component PRE4: N3
Proteasome chaperone 1: O4
Proteasome assembly chaperone 2: P5

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Q
A

B
B

R
B

C
C

S
C

D
D

T
D

E
E

U
E

F
F

V
F

G
G

W
G

H
H

X
H

I
I

Y
I

J
J

Z
J

K
K

0
K

L
L

1
L

M
M

2
M

N
N

3
N

O
O

4
O

P
P

5
P

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Proteasome component C7-alpha

Toggle Identical (AQ)

Proteasome component Y7

Toggle Identical (BR)

Proteasome component Y13

Toggle Identical (CS)

Proteasome component PRE6

Toggle Identical (DT)

Proteasome component PUP2

Toggle Identical (EU)

Proteasome component PRE5

Toggle Identical (FV)

Proteasome component C1

Toggle Identical (GW)

Proteasome component PRE3

Toggle Identical (HX)

Proteasome component PUP1

Toggle Identical (IY)

Proteasome component PUP3

Toggle Identical (JZ)

Proteasome component C11

Toggle Identical (K0)

Proteasome component PRE2

Toggle Identical (L1)

Proteasome component C5

Toggle Identical (M2)

Proteasome component PRE4

Toggle Identical (N3)

Proteasome chaperone 1

Toggle Identical (O4)

Proteasome assembly chaperone 2

Toggle Identical (P5)

Related Entries With Identical Sequence

1fnt.1 | 1g0u.1 | 1g65.1 | 1jd2.1 | 1ryp.1 | 1z7q.1 | 2f16.1 | 2fak.1 | 2gpl.1 | 2zcy.1 | 3bdm.1 | 3d29.1 | 3dy3.1 | 3dy4.1 | 3e47.1 | 3gpj.1 | 3gpt.1 | 3gpw.1 | 3hye.1 | 3jco.1 | 3jcp.1 | 3mg0.1 | 3mg4.1 | 3mg6.1 | 3mg7.1 | 3mg8.1 | 3nzj.1 | 3nzw.1 | 3nzx.1 | 3oeu.1 more...less...

3oev.1 | 3okj.1 | 3sdi.1 | 3sdk.1 | 3shj.1 | 3tdd.1 | 3un4.1 | 3un8.1 | 3wxr.1 | 4cr2.1 | 4cr3.1 | 4cr4.1 | 4eu2.1 | 4fzc.1 | 4fzg.1 | 4gk7.1 | 4hnp.1 | 4hrc.1 | 4hrd.1 | 4inr.1 | 4int.1 | 4inu.1 | 4j70.1 | 4jsq.1 | 4jsu.1 | 4jt0.1 | 4lqi.1 | 4ltc.1 | 4nnn.1 | 4nnw.1 | 4no1.1 | 4no6.1 | 4no8.1 | 4no9.1 | 4q1s.1 | 4qby.1 | 4qlq.1 | 4qls.1 | 4qlt.1 | 4qlu.1 | 4qlv.1 | 4qux.1 | 4quy.1 | 4qv0.1 | 4qv1.1 | 4qv3.1 | 4qv4.1 | 4qv5.1 | 4qv6.1 | 4qv7.1 | 4qv8.1 | 4qv9.1 | 4qvl.1 | 4qvm.1 | 4qvn.1 | 4qvp.1 | 4qvq.1 | 4qvv.1 | 4qvw.1 | 4qvy.1 | 4qw0.1 | 4qw1.1 | 4qw3.1 | 4qw4.1 | 4qw5.1 | 4qw6.1 | 4qw7.1 | 4qwf.1 | 4qwg.1 | 4qwi.1 | 4qwj.1 | 4qwk.1 | 4qwl.1 | 4qwr.1 | 4qws.1 | 4qwu.1 | 4qwx.1 | 4qxj.1 | 4qz0.1 | 4qz1.1 | 4qz2.1 | 4qz3.1 | 4qz4.1 | 4qz5.1 | 4qz6.1 | 4qz7.1 | 4qzw.1 | 4qzx.1 | 4qzz.1 | 4r00.1 | 4r02.1 | 4r17.1 | 4r18.1 | 4rur.1 | 4v7o.1 | 4v7o.2 | 4x6z.1 | 4y69.1 | 4y6a.1 | 4y6v.1 | 4y6z.1 | 4y70.1 | 4y74.1 | 4y75.1 | 4y77.1 | 4y78.1 | 4y7w.1 | 4y7x.1 | 4y7y.1 | 4y80.1 | 4y81.1 | 4y82.1 | 4y84.1 | 4y8g.1 | 4y8h.1 | 4y8i.1 | 4y8j.1 | 4y8k.1 | 4y8l.1 | 4y8m.1 | 4y8n.1 | 4y8o.1 | 4y8p.1 | 4y8q.1 | 4y8r.1 | 4y8s.1 | 4y8t.1 | 4y8u.1 | 4y9y.1 | 4y9z.1 | 4ya0.1 | 4ya1.1 | 4ya2.1 | 4ya3.1 | 4ya4.1 | 4ya5.1 | 4ya7.1 | 4ya9.1 | 4z1l.1 | 5a5b.1 | 5ahj.1 | 5bou.1 | 5bxl.1 | 5bxn.1 | 5cgf.1 | 5cgg.1 | 5cgh.1 | 5cgi.1 | 5cz4.1 | 5cz5.1 | 5cz6.1 | 5cz7.1 | 5cz8.1 | 5cz9.1 | 5cza.1 | 5d0s.1 | 5d0t.1 | 5d0v.1 | 5d0w.1 | 5d0x.1 | 5d0z.1 | 5dki.1 | 5dkj.1 | 5fg7.1 | 5fg9.1 | 5fga.1 | 5fgd.1 | 5fge.1 | 5fgf.1 | 5fgg.1 | 5fgh.1 | 5fgi.1 | 5fhs.1 | 5jhr.1 | 5jhs.1 | 5l52.1 | 5l54.1 | 5l55.1 | 5l5a.1 | 5l5b.1 | 5l5d.1 | 5l5e.1 | 5l5f.1 | 5l5h.1 | 5l5i.1 | 5l5j.1 | 5l5o.1 | 5l5p.1 | 5l5q.1 | 5l5r.1 | 5l5s.1 | 5l5t.1 | 5l5u.1 | 5l5v.1 | 5l5w.1 | 5l5x.1 | 5l5y.1 | 5l5z.1 | 5l60.1 | 5l61.1 | 5l62.1 | 5l63.1 | 5l64.1 | 5l65.1 | 5l66.1 | 5l67.1 | 5l68.1 | 5l69.1 | 5l6a.1 | 5l6b.1 | 5l6c.1 | 5lai.1 | 5laj.1 | 5ltt.1 | 5m2b.1 | 5mp9.1 | 5mpa.1 | 5mpb.1 | 5mpc.1 | 5nif.1 | 5wvi.1 | 5wvk.1 | 6ef0.1 | 6ef1.1 | 6ef3.1 | 6fvt.1 | 6fvu.1 | 6fvv.1 | 6fvw.1 | 6fvx.1 | 6fvy.1 | 6g7f.1 | 6g8m.1 | 6g8n.1 | 6gop.1 | 6h39.1 | 6htb.1 | 6htc.1 | 6htd.1 | 6htp.1 | 6htr.1 | 6hub.1 | 6huc.1 | 6huq.1 | 6huu.1 | 6huv.1 | 6hv3.1 | 6hv4.1 | 6hv5.1 | 6hv7.1 | 6hva.1 | 6hvr.1 | 6hvs.1 | 6hvt.1 | 6hvu.1 | 6hvv.1 | 6hvw.1 | 6hvx.1 | 6hvy.1 | 6hw0.1 | 6hw3.1 | 6hw4.1 | 6hw5.1 | 6hw6.1 | 6hw7.1 | 6hw8.1 | 6hw9.1 | 6hwa.1 | 6hwb.1 | 6hwc.1 | 6hwd.1 | 6hwe.1 | 6hwf.1 | 6j2c.1 | 6j2n.1 | 6j2q.1 | 6j2x.1 | 6j30.1 | 6zou.1 | 6zp6.1 | 6zp8.1 | 7ls5.1 | 7ls6.1 | 7lsx.1 | 7o2l.1 | 7qo3.1 | 7qo5.1 | 7qo6.1 | 7tej.1 | 7teo.1 | 8bw1.1 | 8ohz.1 | 8oi1.1 | 8olr.1 | 8rhj.1 | 8rhk.1 | 8rhl.1 | 8rvl.1 | 8rvo.1 | 8rvp.1 | 8rvq.1 | 8t08.1 | 8t0m.1 | 8u6y.1 | 8u7u.1 | 9fst.1 | 9fsv.1 | 9ft0.1 | 9ft1.1 | 9gbk.1

Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

Swiss Institute of BioinformaticsSIB
Schwede Group
Contact Us
Terms of use
Back to the Top