- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 20 x MG: MAGNESIUM ION(Non-covalent)
MG.1: 1 residues within 4Å:- Chain F: K.173
No protein-ligand interaction detected (PLIP)MG.2: 5 residues within 4Å:- Chain G: T.17, Y.128, R.131, A.132, M.134
5 PLIP interactions:4 interactions with chain G, 1 Ligand-Water interactions- Metal complexes: G:T.17, G:Y.128, G:R.131, G:M.134, H2O.20
MG.3: 4 residues within 4Å:- Chain A: Y.5
- Chain G: A.132, Y.133, M.134
1 PLIP interactions:1 interactions with chain G- Metal complexes: G:A.132
MG.4: 7 residues within 4Å:- Chain H: R.19, G.162, I.163, D.166, L.167, S.169
- Chain Z: D.241
5 PLIP interactions:3 interactions with chain H, 1 interactions with chain Z, 1 Ligand-Water interactions- Metal complexes: H:I.163, H:D.166, H:S.169, Z:D.241, H2O.27
MG.5: 1 residues within 4Å:- Chain I: S.143
No protein-ligand interaction detected (PLIP)MG.6: 4 residues within 4Å:- Chain I: A.175, D.176, D.178, S.181
5 PLIP interactions:3 interactions with chain I, 2 Ligand-Water interactions- Metal complexes: I:A.175, I:D.178, I:S.181, H2O.29, H2O.29
MG.7: 6 residues within 4Å:- Chain K: R.19, A.165, D.168, A.169, S.171
- Chain W: D.205
5 PLIP interactions:3 interactions with chain K, 1 interactions with chain W, 1 Ligand-Water interactions- Metal complexes: K:A.165, K:D.168, K:S.171, W:D.205, H2O.40
MG.8: 3 residues within 4Å:- Chain D: E.105
- Chain L: S.104, S.107
5 PLIP interactions:1 interactions with chain D, 1 interactions with chain L, 3 Ligand-Water interactions- Metal complexes: D:E.105, L:S.104, H2O.10, H2O.41, H2O.41
MG.9: 5 residues within 4Å:- Chain L: R.47, T.211, H.214, I.215, V.217
5 PLIP interactions:3 interactions with chain L, 2 Ligand-Water interactions- Metal complexes: L:T.211, L:H.214, L:V.217, H2O.42, H2O.45
MG.10: 5 residues within 4Å:- Chain 0: L.67
- Chain N: R.19, I.163, D.166, S.169
3 PLIP interactions:2 interactions with chain N, 1 Ligand-Water interactions- Metal complexes: N:I.163, N:S.169, H2O.54
MG.11: 1 residues within 4Å:- Chain T: K.173
No protein-ligand interaction detected (PLIP)MG.12: 5 residues within 4Å:- Chain U: T.17, Y.128, R.131, A.132, M.134
5 PLIP interactions:4 interactions with chain U, 1 Ligand-Water interactions- Metal complexes: U:T.17, U:Y.128, U:R.131, U:M.134, H2O.77
MG.13: 5 residues within 4Å:- Chain O: Y.5
- Chain T: N.127
- Chain U: A.132, Y.133, M.134
1 PLIP interactions:1 interactions with chain U- Metal complexes: U:A.132
MG.14: 7 residues within 4Å:- Chain L: D.241
- Chain V: R.19, G.162, I.163, D.166, S.169, G.170
5 PLIP interactions:3 interactions with chain V, 1 interactions with chain L, 1 Ligand-Water interactions- Metal complexes: V:I.163, V:D.166, V:S.169, L:D.241, H2O.42
MG.15: 1 residues within 4Å:- Chain W: S.143
No protein-ligand interaction detected (PLIP)MG.16: 4 residues within 4Å:- Chain W: A.175, D.176, D.178, S.181
5 PLIP interactions:3 interactions with chain W, 2 Ligand-Water interactions- Metal complexes: W:A.175, W:D.178, W:S.181, H2O.86, H2O.86
MG.17: 6 residues within 4Å:- Chain I: D.205
- Chain Y: R.19, A.165, D.168, A.169, S.171
5 PLIP interactions:3 interactions with chain Y, 1 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: Y:A.165, Y:D.168, Y:S.171, I:D.205, H2O.93
MG.18: 3 residues within 4Å:- Chain R: E.105
- Chain Z: S.104, S.107
5 PLIP interactions:1 interactions with chain R, 1 interactions with chain Z, 3 Ligand-Water interactions- Metal complexes: R:E.105, Z:S.107, H2O.68, H2O.99, H2O.99
MG.19: 5 residues within 4Å:- Chain Z: R.47, T.211, H.214, I.215, V.217
5 PLIP interactions:3 interactions with chain Z, 2 Ligand-Water interactions- Metal complexes: Z:T.211, Z:H.214, Z:V.217, H2O.97, H2O.100
MG.20: 6 residues within 4Å:- Chain 1: R.19, I.163, D.166, G.167, S.169
- Chain M: L.67
3 PLIP interactions:3 interactions with chain 1- Metal complexes: 1:I.163, 1:D.166, 1:S.169
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Groll, M. et al., A gated channel into the proteasome core particle. Nat.Struct.Biol. (2000)
- Release Date
- 2000-11-06
- Peptides
- PROTEASOME COMPONENT Y7: AO
PROTEASOME COMPONENT Y13: BP
PROTEASOME COMPONENT PRE6: CQ
PROTEASOME COMPONENT PUP2: DR
PROTEASOME COMPONENT PRE5: ES
PROTEASOME COMPONENT C1: FT
PROTEASOME COMPONENT C7-ALPHA: GU
PROTEASOME COMPONENT PUP1: HV
PROTEASOME COMPONENT PUP3: IW
PROTEASOME COMPONENT C11: JX
PROTEASOME COMPONENT PRE2: KY
PROTEASOME COMPONENT C5: LZ
PROTEASOME COMPONENT PRE4: M0
PROTEASOME COMPONENT PRE3: N1 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AO
OB
BP
PC
CQ
QD
DR
RE
ES
SF
FT
TG
GU
UH
HV
VI
IW
WJ
JX
XK
KY
YL
LZ
ZM
M0
1N
N1
2
SMTL ID : 1g0u.1
A GATED CHANNEL INTO THE PROTEASOME CORE PARTICLE
PROTEASOME COMPONENT Y7
Toggle Identical (AO)PROTEASOME COMPONENT Y13
Toggle Identical (BP)PROTEASOME COMPONENT PRE6
Toggle Identical (CQ)PROTEASOME COMPONENT PUP2
Toggle Identical (DR)PROTEASOME COMPONENT PRE5
Toggle Identical (ES)PROTEASOME COMPONENT C1
Toggle Identical (FT)PROTEASOME COMPONENT C7-ALPHA
Toggle Identical (GU)PROTEASOME COMPONENT PUP1
Toggle Identical (HV)PROTEASOME COMPONENT PUP3
Toggle Identical (IW)PROTEASOME COMPONENT C11
Toggle Identical (JX)PROTEASOME COMPONENT PRE2
Toggle Identical (KY)PROTEASOME COMPONENT C5
Toggle Identical (LZ)PROTEASOME COMPONENT PRE4
Toggle Identical (M0)PROTEASOME COMPONENT PRE3
Toggle Identical (N1)Related Entries With Identical Sequence
1fnt.1 | 1g65.1 | 1jd2.1 | 1ryp.1 | 1z7q.1 | 2f16.1 | 2fak.1 | 2gpl.1 | 2zcy.1 | 3bdm.1 | 3d29.1 | 3dy3.1 | 3dy4.1 | 3e47.1 | 3gpj.1 | 3gpt.1 | 3gpw.1 | 3hye.1 | 3jco.1 | 3jcp.1 | 3mg0.1 | 3mg4.1 | 3mg6.1 | 3mg7.1 | 3mg8.1 | 3nzj.1 | 3nzw.1 | 3nzx.1 | 3oeu.1 | 3oev.1 more...less...3okj.1 | 3sdi.1 | 3sdk.1 | 3shj.1 | 3tdd.1 | 3un4.1 | 3un8.1 | 3wxr.1 | 4cr2.1 | 4cr3.1 | 4cr4.1 | 4eu2.1 | 4fzc.1 | 4fzg.1 | 4g4s.1 | 4gk7.1 | 4hnp.1 | 4hrc.1 | 4hrd.1 | 4inr.1 | 4int.1 | 4inu.1 | 4j70.1 | 4jsq.1 | 4jsu.1 | 4jt0.1 | 4lqi.1 | 4ltc.1 | 4nnn.1 | 4nnw.1 | 4no1.1 | 4no6.1 | 4no8.1 | 4no9.1 | 4q1s.1 | 4qby.1 | 4qlq.1 | 4qls.1 | 4qlt.1 | 4qlu.1 | 4qlv.1 | 4qux.1 | 4quy.1 | 4qv0.1 | 4qv1.1 | 4qv3.1 | 4qv4.1 | 4qv5.1 | 4qv6.1 | 4qv7.1 | 4qv8.1 | 4qv9.1 | 4qvl.1 | 4qvm.1 | 4qvn.1 | 4qvp.1 | 4qvq.1 | 4qvv.1 | 4qvw.1 | 4qvy.1 | 4qw0.1 | 4qw1.1 | 4qw3.1 | 4qw4.1 | 4qw5.1 | 4qw6.1 | 4qw7.1 | 4qwf.1 | 4qwg.1 | 4qwi.1 | 4qwj.1 | 4qwk.1 | 4qwl.1 | 4qwr.1 | 4qws.1 | 4qwu.1 | 4qwx.1 | 4qxj.1 | 4qz0.1 | 4qz1.1 | 4qz2.1 | 4qz3.1 | 4qz4.1 | 4qz5.1 | 4qz6.1 | 4qz7.1 | 4qzw.1 | 4qzx.1 | 4qzz.1 | 4r00.1 | 4r02.1 | 4r17.1 | 4r18.1 | 4rur.1 | 4v7o.1 | 4v7o.2 | 4x6z.1 | 4y69.1 | 4y6a.1 | 4y6v.1 | 4y6z.1 | 4y70.1 | 4y74.1 | 4y75.1 | 4y77.1 | 4y78.1 | 4y7w.1 | 4y7x.1 | 4y7y.1 | 4y80.1 | 4y81.1 | 4y82.1 | 4y84.1 | 4y8g.1 | 4y8h.1 | 4y8i.1 | 4y8j.1 | 4y8k.1 | 4y8l.1 | 4y8m.1 | 4y8n.1 | 4y8o.1 | 4y8p.1 | 4y8q.1 | 4y8r.1 | 4y8s.1 | 4y8t.1 | 4y8u.1 | 4y9y.1 | 4y9z.1 | 4ya0.1 | 4ya1.1 | 4ya2.1 | 4ya3.1 | 4ya4.1 | 4ya5.1 | 4ya7.1 | 4ya9.1 | 4z1l.1 | 5a5b.1 | 5ahj.1 | 5bou.1 | 5bxl.1 | 5bxn.1 | 5cgf.1 | 5cgg.1 | 5cgh.1 | 5cgi.1 | 5cz4.1 | 5cz5.1 | 5cz6.1 | 5cz7.1 | 5cz8.1 | 5cz9.1 | 5cza.1 | 5d0s.1 | 5d0t.1 | 5d0v.1 | 5d0w.1 | 5d0x.1 | 5d0z.1 | 5dki.1 | 5dkj.1 | 5fg7.1 | 5fg9.1 | 5fga.1 | 5fgd.1 | 5fge.1 | 5fgf.1 | 5fgg.1 | 5fgh.1 | 5fgi.1 | 5fhs.1 | 5jhr.1 | 5jhs.1 | 5l52.1 | 5l54.1 | 5l55.1 | 5l5a.1 | 5l5b.1 | 5l5d.1 | 5l5e.1 | 5l5f.1 | 5l5h.1 | 5l5i.1 | 5l5j.1 | 5l5o.1 | 5l5p.1 | 5l5q.1 | 5l5r.1 | 5l5s.1 | 5l5t.1 | 5l5u.1 | 5l5v.1 | 5l5w.1 | 5l5x.1 | 5l5y.1 | 5l5z.1 | 5l60.1 | 5l61.1 | 5l62.1 | 5l63.1 | 5l64.1 | 5l65.1 | 5l66.1 | 5l67.1 | 5l68.1 | 5l69.1 | 5l6a.1 | 5l6b.1 | 5l6c.1 | 5lai.1 | 5laj.1 | 5ltt.1 | 5m2b.1 | 5mp9.1 | 5mpa.1 | 5mpb.1 | 5mpc.1 | 5nif.1 | 5wvi.1 | 5wvk.1 | 6ef0.1 | 6ef1.1 | 6ef3.1 | 6fvt.1 | 6fvu.1 | 6fvv.1 | 6fvw.1 | 6fvx.1 | 6fvy.1 | 6g7f.1 | 6g8m.1 | 6g8n.1 | 6gop.1 | 6h39.1 | 6htb.1 | 6htc.1 | 6htd.1 | 6htp.1 | 6htr.1 | 6hub.1 | 6huc.1 | 6huq.1 | 6huu.1 | 6huv.1 | 6hv3.1 | 6hv4.1 | 6hv5.1 | 6hv7.1 | 6hva.1 | 6hvr.1 | 6hvs.1 | 6hvt.1 | 6hvu.1 | 6hvv.1 | 6hvw.1 | 6hvx.1 | 6hvy.1 | 6hw0.1 | 6hw3.1 | 6hw4.1 | 6hw5.1 | 6hw6.1 | 6hw7.1 | 6hw8.1 | 6hw9.1 | 6hwa.1 | 6hwb.1 | 6hwc.1 | 6hwd.1 | 6hwe.1 | 6hwf.1 | 6j2c.1 | 6j2n.1 | 6j2q.1 | 6j2x.1 | 6j30.1 | 6zou.1 | 6zp6.1 | 6zp8.1 | 7ls5.1 | 7ls6.1 | 7lsx.1 | 7o2l.1 | 7qo3.1 | 7qo5.1 | 7qo6.1 | 7tej.1 | 7teo.1 | 8bw1.1 | 8ohz.1 | 8oi1.1 | 8olr.1 | 8rhj.1 | 8rhk.1 | 8rhl.1 | 8rvl.1 | 8rvo.1 | 8rvp.1 | 8rvq.1 | 8t08.1 | 8t0m.1 | 8u6y.1 | 8u7u.1 | 9fst.1 | 9fsv.1 | 9ft0.1 | 9ft1.1 | 9gbk.1