- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 20 x MG: MAGNESIUM ION(Non-covalent)
MG.1: 5 residues within 4Å:- Chain A: T.8, Y.119, R.122, A.123, M.125
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:T.8, A:Y.119, A:R.122, A:M.125, H2O.1
MG.2: 5 residues within 4Å:- Chain A: A.123, Y.124
- Chain B: Y.5
- Chain G: S.9, N.123
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:A.123, H2O.3, H2O.20
MG.3: 3 residues within 4Å:- Chain E: E.97
- Chain M: S.85, S.88
5 PLIP interactions:2 interactions with chain M, 3 Ligand-Water interactions- Metal complexes: M:S.85, M:S.88, H2O.45, H2O.46, H2O.46
MG.4: 1 residues within 4Å:- Chain G: K.169
No protein-ligand interaction detected (PLIP)MG.5: 5 residues within 4Å:- Chain 1: L.34
- Chain H: R.28, I.172, D.175, S.178
3 PLIP interactions:3 interactions with chain H- Metal complexes: H:I.172, H:D.175, H:S.178
MG.6: 7 residues within 4Å:- Chain 0: D.222
- Chain I: R.19, G.162, I.163, D.166, L.167, S.169
5 PLIP interactions:3 interactions with chain I, 1 interactions with chain 0, 1 Ligand-Water interactions- Metal complexes: I:I.163, I:D.166, I:S.169, 0:D.222, H2O.104
MG.7: 2 residues within 4Å:- Chain J: G.139, S.142
4 PLIP interactions:2 interactions with chain J, 2 Ligand-Water interactions- Metal complexes: J:G.139, J:S.142, H2O.34, H2O.35
MG.8: 4 residues within 4Å:- Chain J: A.174, D.175, D.177, S.180
5 PLIP interactions:3 interactions with chain J, 2 Ligand-Water interactions- Metal complexes: J:A.174, J:D.177, J:S.180, H2O.33, H2O.33
MG.9: 7 residues within 4Å:- Chain L: R.19, A.165, H.166, D.168, A.169, S.171
- Chain X: D.204
5 PLIP interactions:3 interactions with chain L, 1 interactions with chain X, 1 Ligand-Water interactions- Metal complexes: L:A.165, L:D.168, L:S.171, X:D.204, H2O.44
MG.10: 5 residues within 4Å:- Chain M: R.28, T.192, H.195, I.196, V.198
5 PLIP interactions:3 interactions with chain M, 2 Ligand-Water interactions- Metal complexes: M:T.192, M:H.195, M:V.198, H2O.46, H2O.49
MG.11: 5 residues within 4Å:- Chain O: T.8, Y.119, R.122, A.123, M.125
5 PLIP interactions:4 interactions with chain O, 1 Ligand-Water interactions- Metal complexes: O:T.8, O:Y.119, O:R.122, O:M.125, H2O.58
MG.12: 5 residues within 4Å:- Chain O: A.123, Y.124
- Chain P: Y.5
- Chain U: S.9, N.123
3 PLIP interactions:1 interactions with chain O, 2 Ligand-Water interactions- Metal complexes: O:A.123, H2O.60, H2O.77
MG.13: 3 residues within 4Å:- Chain 0: S.85, S.88
- Chain S: E.97
5 PLIP interactions:2 interactions with chain 0, 3 Ligand-Water interactions- Metal complexes: 0:S.85, 0:S.88, H2O.103, H2O.104, H2O.104
MG.14: 1 residues within 4Å:- Chain U: K.169
No protein-ligand interaction detected (PLIP)MG.15: 6 residues within 4Å:- Chain N: L.34
- Chain V: R.28, I.172, D.175, G.176, S.178
3 PLIP interactions:3 interactions with chain V- Metal complexes: V:I.172, V:D.175, V:S.178
MG.16: 7 residues within 4Å:- Chain M: D.222
- Chain W: R.19, G.162, I.163, D.166, L.167, S.169
5 PLIP interactions:3 interactions with chain W, 1 interactions with chain M, 1 Ligand-Water interactions- Metal complexes: W:I.163, W:D.166, W:S.169, M:D.222, H2O.84
MG.17: 2 residues within 4Å:- Chain X: G.139, S.142
3 PLIP interactions:1 interactions with chain X, 2 Ligand-Water interactions- Metal complexes: X:S.142, H2O.91, H2O.92
MG.18: 4 residues within 4Å:- Chain X: A.174, D.175, D.177, S.180
5 PLIP interactions:3 interactions with chain X, 2 Ligand-Water interactions- Metal complexes: X:A.174, X:D.177, X:S.180, H2O.90, H2O.90
MG.19: 6 residues within 4Å:- Chain J: D.204
- Chain Z: R.19, A.165, D.168, A.169, S.171
5 PLIP interactions:1 interactions with chain J, 3 interactions with chain Z, 1 Ligand-Water interactions- Metal complexes: J:D.204, Z:A.165, Z:D.168, Z:S.171, H2O.34
MG.20: 4 residues within 4Å:- Chain 0: T.192, H.195, I.196, V.198
5 PLIP interactions:3 interactions with chain 0, 2 Ligand-Water interactions- Metal complexes: 0:T.192, 0:H.195, 0:V.198, H2O.101, H2O.104
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Groll, M. et al., Structure of 20S proteasome from yeast at 2.4 A resolution. Nature (1997)
- Release Date
- 1998-04-15
- Peptides
- 20S PROTEASOME: AO
20S PROTEASOME: BP
20S PROTEASOME: CQ
20S PROTEASOME: DR
20S PROTEASOME: ES
20S PROTEASOME: FT
20S PROTEASOME: GU
20S PROTEASOME: HV
20S PROTEASOME: IW
20S PROTEASOME: JX
20S PROTEASOME: KY
20S PROTEASOME: LZ
20S PROTEASOME: M0
20S PROTEASOME: N1 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AO
OB
BP
PC
CQ
QD
DR
RE
ES
SF
FT
TG
GU
UH
HV
VI
IW
WJ
JX
XK
KY
YL
LZ
ZM
M0
1N
N1
2
SMTL ID : 1ryp.1
CRYSTAL STRUCTURE OF THE 20S PROTEASOME FROM YEAST AT 2.4 ANGSTROMS RESOLUTION
20S PROTEASOME
Toggle Identical (AO)20S PROTEASOME
Toggle Identical (BP)20S PROTEASOME
Toggle Identical (CQ)20S PROTEASOME
Toggle Identical (DR)20S PROTEASOME
Toggle Identical (ES)20S PROTEASOME
Toggle Identical (FT)20S PROTEASOME
Toggle Identical (GU)20S PROTEASOME
Toggle Identical (HV)20S PROTEASOME
Toggle Identical (IW)20S PROTEASOME
Toggle Identical (JX)20S PROTEASOME
Toggle Identical (KY)20S PROTEASOME
Toggle Identical (LZ)20S PROTEASOME
Toggle Identical (M0)20S PROTEASOME
Toggle Identical (N1)Related Entries With Identical Sequence
1fnt.1 | 1g0u.1 | 1g65.1 | 1jd2.1 | 1z7q.1 | 2f16.1 | 2fak.1 | 2gpl.1 | 2zcy.1 | 3bdm.1 | 3d29.1 | 3dy3.1 | 3dy4.1 | 3e47.1 | 3gpj.1 | 3gpt.1 | 3gpw.1 | 3hye.1 | 3jco.1 | 3jcp.1 | 3mg0.1 | 3mg4.1 | 3mg6.1 | 3mg7.1 | 3mg8.1 | 3nzj.1 | 3nzw.1 | 3nzx.1 | 3oeu.1 | 3oev.1 more...less...3okj.1 | 3sdi.1 | 3sdk.1 | 3shj.1 | 3tdd.1 | 3un4.1 | 3un8.1 | 3wxr.1 | 4cr2.1 | 4cr3.1 | 4cr4.1 | 4eu2.1 | 4fzc.1 | 4fzg.1 | 4g4s.1 | 4gk7.1 | 4hnp.1 | 4hrc.1 | 4hrd.1 | 4inr.1 | 4int.1 | 4inu.1 | 4j70.1 | 4jsq.1 | 4jsu.1 | 4jt0.1 | 4lqi.1 | 4ltc.1 | 4nnn.1 | 4nnw.1 | 4no1.1 | 4no6.1 | 4no8.1 | 4no9.1 | 4q1s.1 | 4qby.1 | 4qlq.1 | 4qls.1 | 4qlt.1 | 4qlu.1 | 4qlv.1 | 4qux.1 | 4quy.1 | 4qv0.1 | 4qv1.1 | 4qv3.1 | 4qv4.1 | 4qv5.1 | 4qv6.1 | 4qv7.1 | 4qv8.1 | 4qv9.1 | 4qvl.1 | 4qvm.1 | 4qvn.1 | 4qvp.1 | 4qvq.1 | 4qvv.1 | 4qvw.1 | 4qvy.1 | 4qw0.1 | 4qw1.1 | 4qw3.1 | 4qw4.1 | 4qw5.1 | 4qw6.1 | 4qw7.1 | 4qwf.1 | 4qwg.1 | 4qwi.1 | 4qwj.1 | 4qwk.1 | 4qwl.1 | 4qwr.1 | 4qws.1 | 4qwu.1 | 4qwx.1 | 4qxj.1 | 4qz0.1 | 4qz1.1 | 4qz2.1 | 4qz3.1 | 4qz4.1 | 4qz5.1 | 4qz6.1 | 4qz7.1 | 4qzw.1 | 4qzx.1 | 4qzz.1 | 4r00.1 | 4r02.1 | 4r17.1 | 4r18.1 | 4rur.1 | 4v7o.1 | 4v7o.2 | 4x6z.1 | 4y69.1 | 4y6a.1 | 4y6v.1 | 4y6z.1 | 4y70.1 | 4y74.1 | 4y75.1 | 4y77.1 | 4y78.1 | 4y7w.1 | 4y7x.1 | 4y7y.1 | 4y80.1 | 4y81.1 | 4y82.1 | 4y84.1 | 4y8g.1 | 4y8h.1 | 4y8i.1 | 4y8j.1 | 4y8k.1 | 4y8l.1 | 4y8m.1 | 4y8n.1 | 4y8o.1 | 4y8p.1 | 4y8q.1 | 4y8r.1 | 4y8s.1 | 4y8t.1 | 4y8u.1 | 4y9y.1 | 4y9z.1 | 4ya0.1 | 4ya1.1 | 4ya2.1 | 4ya3.1 | 4ya4.1 | 4ya5.1 | 4ya7.1 | 4ya9.1 | 4z1l.1 | 5a5b.1 | 5ahj.1 | 5bou.1 | 5bxl.1 | 5bxn.1 | 5cgf.1 | 5cgg.1 | 5cgh.1 | 5cgi.1 | 5cz4.1 | 5cz5.1 | 5cz6.1 | 5cz7.1 | 5cz8.1 | 5cz9.1 | 5cza.1 | 5d0s.1 | 5d0t.1 | 5d0v.1 | 5d0w.1 | 5d0x.1 | 5d0z.1 | 5dki.1 | 5dkj.1 | 5fg7.1 | 5fg9.1 | 5fga.1 | 5fgd.1 | 5fge.1 | 5fgf.1 | 5fgg.1 | 5fgh.1 | 5fgi.1 | 5fhs.1 | 5jhr.1 | 5jhs.1 | 5l52.1 | 5l54.1 | 5l55.1 | 5l5a.1 | 5l5b.1 | 5l5d.1 | 5l5e.1 | 5l5f.1 | 5l5h.1 | 5l5i.1 | 5l5j.1 | 5l5o.1 | 5l5p.1 | 5l5q.1 | 5l5r.1 | 5l5s.1 | 5l5t.1 | 5l5u.1 | 5l5v.1 | 5l5w.1 | 5l5x.1 | 5l5y.1 | 5l5z.1 | 5l60.1 | 5l61.1 | 5l62.1 | 5l63.1 | 5l64.1 | 5l65.1 | 5l66.1 | 5l67.1 | 5l68.1 | 5l69.1 | 5l6a.1 | 5l6b.1 | 5l6c.1 | 5lai.1 | 5laj.1 | 5ltt.1 | 5m2b.1 | 5mp9.1 | 5mpa.1 | 5mpb.1 | 5mpc.1 | 5nif.1 | 5wvi.1 | 5wvk.1 | 6ef0.1 | 6ef1.1 | 6ef3.1 | 6fvt.1 | 6fvu.1 | 6fvv.1 | 6fvw.1 | 6fvx.1 | 6fvy.1 | 6g7f.1 | 6g8m.1 | 6g8n.1 | 6gop.1 | 6h39.1 | 6htb.1 | 6htc.1 | 6htd.1 | 6htp.1 | 6htr.1 | 6hub.1 | 6huc.1 | 6huq.1 | 6huu.1 | 6huv.1 | 6hv3.1 | 6hv4.1 | 6hv5.1 | 6hv7.1 | 6hva.1 | 6hvr.1 | 6hvs.1 | 6hvt.1 | 6hvu.1 | 6hvv.1 | 6hvw.1 | 6hvx.1 | 6hvy.1 | 6hw0.1 | 6hw3.1 | 6hw4.1 | 6hw5.1 | 6hw6.1 | 6hw7.1 | 6hw8.1 | 6hw9.1 | 6hwa.1 | 6hwb.1 | 6hwc.1 | 6hwd.1 | 6hwe.1 | 6hwf.1 | 6j2c.1 | 6j2n.1 | 6j2q.1 | 6j2x.1 | 6j30.1 | 6zou.1 | 6zp6.1 | 6zp8.1 | 7ls5.1 | 7ls6.1 | 7lsx.1 | 7o2l.1 | 7qo3.1 | 7qo5.1 | 7qo6.1 | 7tej.1 | 7teo.1 | 8bw1.1 | 8ohz.1 | 8oi1.1 | 8olr.1 | 8rhj.1 | 8rhk.1 | 8rhl.1 | 8rvl.1 | 8rvo.1 | 8rvp.1 | 8rvq.1 | 8t08.1 | 8t0m.1 | 8u6y.1 | 8u7u.1 | 9fst.1 | 9fsv.1 | 9ft0.1 | 9ft1.1 | 9gbk.1