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SMTL ID : 3mg0.1

Structure of yeast 20S proteasome with bortezomib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.68 Å

Oligo State

hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer

Ligands

6 x BO2: N-[(1R)-1-(DIHYDROXYBORYL)-3-METHYLBUTYL]-N-(PYRAZIN-2-YLCARBONYL)-L-PHENYLALANINAMIDE(Non-covalent)

BO2.1:	12 residues within 4Å: Chain H: T.1, S.20, T.21, Q.22, K.33, G.45, A.46, G.47, T.48, A.49 Chain I: D.124, C.128 12 PLIP interactions: 11 interactions with chain H, 1 interactions with chain I Hydrophobic interactions: H:K.33, H:K.33, H:A.49 Hydrogen bonds: H:T.1, H:T.1, H:T.21, H:T.21, H:G.47, H:G.47, H:G.47, H:A.49, I:D.124
BO2.2:	13 residues within 4Å: Chain K: T.1, R.19, A.20, T.21, A.27, V.31, K.33, M.45, A.46, G.47, A.49, S.131 Chain L: D.126 11 PLIP interactions: 11 interactions with chain K Hydrophobic interactions: K:V.31, K:A.49 Hydrogen bonds: K:T.1, K:T.1, K:T.21, K:T.21, K:G.47, K:G.47, K:G.47, K:A.49 Water bridges: K:A.50
BO2.3:	15 residues within 4Å: Chain H: H.114, S.118 Chain N: T.1, R.19, T.20, T.21, T.22, A.27, K.33, R.45, S.46, G.47, S.48, A.49, S.168 16 PLIP interactions: 2 interactions with chain H, 14 interactions with chain N Hydrogen bonds: H:S.118, N:T.1, N:T.1, N:T.21, N:T.21, N:T.21, N:G.47, N:G.47, N:G.47, N:A.49 pi-Stacking: H:H.114 Hydrophobic interactions: N:A.49 Water bridges: N:T.1, N:R.19, N:A.50, N:A.50
BO2.4:	13 residues within 4Å: Chain V: T.1, S.20, T.21, Q.22, A.27, K.33, G.45, A.46, G.47, T.48, A.49 Chain W: D.124, C.128 10 PLIP interactions: 9 interactions with chain V, 1 interactions with chain W Hydrophobic interactions: V:K.33, V:A.49 Hydrogen bonds: V:T.1, V:T.1, V:T.21, V:T.21, V:G.47, V:G.47, V:A.49, W:D.124
BO2.5:	13 residues within 4Å: Chain Y: T.1, R.19, A.20, T.21, A.22, A.27, V.31, K.33, A.46, G.47, A.49, S.131 Chain Z: D.126 12 PLIP interactions: 12 interactions with chain Y Hydrophobic interactions: Y:V.31, Y:A.49 Hydrogen bonds: Y:T.1, Y:T.1, Y:T.21, Y:T.21, Y:G.47, Y:G.47, Y:G.47, Y:A.49, Y:Y.170 Water bridges: Y:A.50
BO2.6:	15 residues within 4Å: Chain 1: T.1, R.19, T.20, T.21, T.22, A.27, K.33, R.45, S.46, G.47, S.48, A.49, S.168 Chain V: H.114, S.118 13 PLIP interactions: 2 interactions with chain V, 11 interactions with chain 1 Hydrogen bonds: V:S.118, 1:T.1, 1:T.1, 1:T.21, 1:T.21, 1:T.21, 1:G.47, 1:G.47, 1:G.47, 1:A.49, 1:S.168 pi-Stacking: V:H.114 Hydrophobic interactions: 1:T.20

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Blackburn, C. et al., Characterization of a new series of non-covalent proteasome inhibitors with exquisite potency and selectivity for the 20S beta5-subunit. Biochem.J. (2010)

Release Date

2011-05-18

Peptides

Proteasome component Y7: AO
Proteasome component Y13: BP
Proteasome component PRE6: CQ
Proteasome component PUP2: DR
Proteasome component PRE5: ES
Proteasome component C1: FT
Proteasome component C7-alpha: GU
Proteasome component PUP1: HV
Proteasome component PUP3: IW
Proteasome component C11: JX
Proteasome component PRE2: KY
Proteasome component C5: LZ
Proteasome component PRE4: M0
Proteasome component PRE3: N1

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

O
O

B
B

P
P

C
C

Q
Q

D
D

R
R

E
E

S
S

F
F

T
T

G
G

U
U

H
H

V
V

I
I

W
W

J
J

X
X

K
K

Y
Y

L
L

Z
Z

M
M

0
1

N
N

1
2

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Proteasome component Y7

Toggle Identical (AO)

Proteasome component Y13

Toggle Identical (BP)

Proteasome component PRE6

Toggle Identical (CQ)

Proteasome component PUP2

Toggle Identical (DR)

Proteasome component PRE5

Toggle Identical (ES)

Proteasome component C1

Toggle Identical (FT)

Proteasome component C7-alpha

Toggle Identical (GU)

Proteasome component PUP1

Toggle Identical (HV)

Proteasome component PUP3

Toggle Identical (IW)

Proteasome component C11

Toggle Identical (JX)

Proteasome component PRE2

Toggle Identical (KY)

Proteasome component C5

Toggle Identical (LZ)

Proteasome component PRE4

Toggle Identical (M0)

Proteasome component PRE3

Toggle Identical (N1)

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1fnt.1 | 1g0u.1 | 1g65.1 | 1jd2.1 | 1ryp.1 | 1z7q.1 | 2f16.1 | 2fak.1 | 2gpl.1 | 2zcy.1 | 3bdm.1 | 3d29.1 | 3dy3.1 | 3dy4.1 | 3e47.1 | 3gpj.1 | 3gpt.1 | 3gpw.1 | 3hye.1 | 3jco.1 | 3jcp.1 | 3mg4.1 | 3mg6.1 | 3mg7.1 | 3mg8.1 | 3nzj.1 | 3nzw.1 | 3nzx.1 | 3oeu.1 | 3oev.1 more...less...

3okj.1 | 3sdi.1 | 3sdk.1 | 3shj.1 | 3tdd.1 | 3un4.1 | 3un8.1 | 3wxr.1 | 4cr2.1 | 4cr3.1 | 4cr4.1 | 4eu2.1 | 4fzc.1 | 4fzg.1 | 4g4s.1 | 4gk7.1 | 4hnp.1 | 4hrc.1 | 4hrd.1 | 4inr.1 | 4int.1 | 4inu.1 | 4j70.1 | 4jsq.1 | 4jsu.1 | 4jt0.1 | 4lqi.1 | 4ltc.1 | 4nnn.1 | 4nnw.1 | 4no1.1 | 4no6.1 | 4no8.1 | 4no9.1 | 4q1s.1 | 4qby.1 | 4qlq.1 | 4qls.1 | 4qlt.1 | 4qlu.1 | 4qlv.1 | 4qux.1 | 4quy.1 | 4qv0.1 | 4qv1.1 | 4qv3.1 | 4qv4.1 | 4qv5.1 | 4qv6.1 | 4qv7.1 | 4qv8.1 | 4qv9.1 | 4qvl.1 | 4qvm.1 | 4qvn.1 | 4qvp.1 | 4qvq.1 | 4qvv.1 | 4qvw.1 | 4qvy.1 | 4qw0.1 | 4qw1.1 | 4qw3.1 | 4qw4.1 | 4qw5.1 | 4qw6.1 | 4qw7.1 | 4qwf.1 | 4qwg.1 | 4qwi.1 | 4qwj.1 | 4qwk.1 | 4qwl.1 | 4qwr.1 | 4qws.1 | 4qwu.1 | 4qwx.1 | 4qxj.1 | 4qz0.1 | 4qz1.1 | 4qz2.1 | 4qz3.1 | 4qz4.1 | 4qz5.1 | 4qz6.1 | 4qz7.1 | 4qzw.1 | 4qzx.1 | 4qzz.1 | 4r00.1 | 4r02.1 | 4r17.1 | 4r18.1 | 4rur.1 | 4v7o.1 | 4v7o.2 | 4x6z.1 | 4y69.1 | 4y6a.1 | 4y6v.1 | 4y6z.1 | 4y70.1 | 4y74.1 | 4y75.1 | 4y77.1 | 4y78.1 | 4y7w.1 | 4y7x.1 | 4y7y.1 | 4y80.1 | 4y81.1 | 4y82.1 | 4y84.1 | 4y8g.1 | 4y8h.1 | 4y8i.1 | 4y8j.1 | 4y8k.1 | 4y8l.1 | 4y8m.1 | 4y8n.1 | 4y8o.1 | 4y8p.1 | 4y8q.1 | 4y8r.1 | 4y8s.1 | 4y8t.1 | 4y8u.1 | 4y9y.1 | 4y9z.1 | 4ya0.1 | 4ya1.1 | 4ya2.1 | 4ya3.1 | 4ya4.1 | 4ya5.1 | 4ya7.1 | 4ya9.1 | 4z1l.1 | 5a5b.1 | 5ahj.1 | 5bou.1 | 5bxl.1 | 5bxn.1 | 5cgf.1 | 5cgg.1 | 5cgh.1 | 5cgi.1 | 5cz4.1 | 5cz5.1 | 5cz6.1 | 5cz7.1 | 5cz8.1 | 5cz9.1 | 5cza.1 | 5d0s.1 | 5d0t.1 | 5d0v.1 | 5d0w.1 | 5d0x.1 | 5d0z.1 | 5dki.1 | 5dkj.1 | 5fg7.1 | 5fg9.1 | 5fga.1 | 5fgd.1 | 5fge.1 | 5fgf.1 | 5fgg.1 | 5fgh.1 | 5fgi.1 | 5fhs.1 | 5jhr.1 | 5jhs.1 | 5l52.1 | 5l54.1 | 5l55.1 | 5l5a.1 | 5l5b.1 | 5l5d.1 | 5l5e.1 | 5l5f.1 | 5l5h.1 | 5l5i.1 | 5l5j.1 | 5l5o.1 | 5l5p.1 | 5l5q.1 | 5l5r.1 | 5l5s.1 | 5l5t.1 | 5l5u.1 | 5l5v.1 | 5l5w.1 | 5l5x.1 | 5l5y.1 | 5l5z.1 | 5l60.1 | 5l61.1 | 5l62.1 | 5l63.1 | 5l64.1 | 5l65.1 | 5l66.1 | 5l67.1 | 5l68.1 | 5l69.1 | 5l6a.1 | 5l6b.1 | 5l6c.1 | 5lai.1 | 5laj.1 | 5ltt.1 | 5m2b.1 | 5mp9.1 | 5mpa.1 | 5mpb.1 | 5mpc.1 | 5nif.1 | 5wvi.1 | 5wvk.1 | 6ef0.1 | 6ef1.1 | 6ef3.1 | 6fvt.1 | 6fvu.1 | 6fvv.1 | 6fvw.1 | 6fvx.1 | 6fvy.1 | 6g7f.1 | 6g8m.1 | 6g8n.1 | 6gop.1 | 6h39.1 | 6htb.1 | 6htc.1 | 6htd.1 | 6htp.1 | 6htr.1 | 6hub.1 | 6huc.1 | 6huq.1 | 6huu.1 | 6huv.1 | 6hv3.1 | 6hv4.1 | 6hv5.1 | 6hv7.1 | 6hva.1 | 6hvr.1 | 6hvs.1 | 6hvt.1 | 6hvu.1 | 6hvv.1 | 6hvw.1 | 6hvx.1 | 6hvy.1 | 6hw0.1 | 6hw3.1 | 6hw4.1 | 6hw5.1 | 6hw6.1 | 6hw7.1 | 6hw8.1 | 6hw9.1 | 6hwa.1 | 6hwb.1 | 6hwc.1 | 6hwd.1 | 6hwe.1 | 6hwf.1 | 6j2c.1 | 6j2n.1 | 6j2q.1 | 6j2x.1 | 6j30.1 | 6zou.1 | 6zp6.1 | 6zp8.1 | 7ls5.1 | 7ls6.1 | 7lsx.1 | 7o2l.1 | 7qo3.1 | 7qo5.1 | 7qo6.1 | 7tej.1 | 7teo.1 | 8bw1.1 | 8ohz.1 | 8oi1.1 | 8olr.1 | 8rhj.1 | 8rhk.1 | 8rhl.1 | 8rvl.1 | 8rvo.1 | 8rvp.1 | 8rvq.1 | 8t08.1 | 8t0m.1 | 8u6y.1 | 8u7u.1 | 9fst.1 | 9fsv.1 | 9ft0.1 | 9ft1.1 | 9gbk.1

Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
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Extreme

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