SMTL ID : 1fpn.2 (4 other biounits)

HUMAN RHINOVIRUS SEROTYPE 2 (HRV2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-5-5-5-5-mer

Ligands

5 x DAO: LAURIC ACID(Non-covalent)

DAO.1: 10 residues within 4Å: Chain A: I.99, N.100, L.101, Q.102, S.121, I.123, L.182, N.211, M.213, L.216 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.99, A:I.99, A:L.101, A:I.123, A:N.211, A:L.216 Hydrogen bonds: A:L.101, A:Q.102, A:N.211 Salt bridges: A:H.259 DAO.2: 10 residues within 4Å: Chain E: I.99, N.100, L.101, Q.102, S.121, I.123, L.182, N.211, M.213, L.216 10 PLIP interactions: 10 interactions with chain E Hydrophobic interactions: E:I.99, E:I.99, E:L.101, E:I.123, E:N.211, E:L.216 Hydrogen bonds: E:L.101, E:Q.102, E:N.211 Salt bridges: E:H.259 DAO.3: 10 residues within 4Å: Chain I: I.99, N.100, L.101, Q.102, S.121, I.123, L.182, N.211, M.213, L.216 10 PLIP interactions: 10 interactions with chain I Hydrophobic interactions: I:I.99, I:I.99, I:L.101, I:I.123, I:N.211, I:L.216 Hydrogen bonds: I:L.101, I:Q.102, I:N.211 Salt bridges: I:H.259 DAO.4: 10 residues within 4Å: Chain M: I.99, N.100, L.101, Q.102, S.121, I.123, L.182, N.211, M.213, L.216 10 PLIP interactions: 10 interactions with chain M Hydrophobic interactions: M:I.99, M:I.99, M:L.101, M:I.123, M:N.211, M:L.216 Hydrogen bonds: M:L.101, M:Q.102, M:N.211 Salt bridges: M:H.259 DAO.5: 10 residues within 4Å: Chain Q: I.99, N.100, L.101, Q.102, S.121, I.123, L.182, N.211, M.213, L.216 10 PLIP interactions: 10 interactions with chain Q Hydrophobic interactions: Q:I.99, Q:I.99, Q:L.101, Q:I.123, Q:N.211, Q:L.216 Hydrogen bonds: Q:L.101, Q:Q.102, Q:N.211 Salt bridges: Q:H.259

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Verdaguer, N. et al., Structure of human rhinovirus serotype 2 (HRV2). J.Mol.Biol. (2000)

Release Date

2000-09-20

Peptides

COAT PROTEIN VP1: AEIMQ
COAT PROTEIN VP2: BFJNR
COAT PROTEIN VP3: CGKOS
COAT PROTEIN VP4: DHLPT

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

E
1

I
1

M
1

Q
1

B
2

F
2

J
2

N
2

R
2

C
3

G
3

K
3

O
3

S
3

D
4

H
4

L
4

P
4

T
4

COAT PROTEIN VP1

COAT PROTEIN VP2

COAT PROTEIN VP3

COAT PROTEIN VP4

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