SMTL ID : 1v9u.4 (3 other biounits)

Human Rhinovirus 2 bound to a fragment of its cellular receptor protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.60 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x DAO: LAURIC ACID(Non-covalent)

DAO.1: 10 residues within 4Å: Chain A: I.99, N.100, L.101, Q.102, I.123, Y.145, F.180, Y.191, M.193, N.211 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.101, A:L.101, A:I.123, A:I.123, A:Y.145, A:F.180, A:Y.191, A:N.211 Hydrogen bonds: A:L.101, A:Q.102, A:Q.102, A:N.211 Salt bridges: A:H.259

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain E: W.22, D.25, E.27, D.29, D.35, E.36 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:D.25, E:E.27, E:D.35, E:E.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Verdaguer, N. et al., X-ray structure of a minor group human rhinovirus bound to a fragment of its cellular receptor protein. NAT.STRUCT.MOL.BIOL. (2004)

Release Date

2004-05-04

Peptides

Coat protein VP1: A
Coat protein VP2: B
Coat protein VP3: C
Coat protein VP4: D
LDL-receptor class A 3: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
2

C
3

D
4

E
5

Coat protein VP1

Coat protein VP2

Coat protein VP3

Coat protein VP4

LDL-receptor class A 3

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