SMTL ID : 3vdd.2 (3 other biounits)

Structure of HRV2 capsid complexed with antiviral compound BTA798

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-5-5-5-5-mer

Ligands

5 x BT8: 3-ethoxy-6-{2-[1-(6-methylpyridazin-3-yl)piperidin-4-yl]ethoxy}-1,2-benzoxazole(Non-covalent)

BT8.1: 17 residues within 4Å: Chain A: I.99, L.101, S.121, I.123, Y.143, M.144, Y.145, A.167, F.180, L.182, Y.191, Y.192, T.207, N.211, M.213, L.216, H.237 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.99, A:I.99, A:I.123, A:Y.145, A:Y.145, A:Y.145, A:L.182, A:Y.191, A:T.207, A:N.211 Hydrogen bonds: A:L.101 pi-Stacking: A:F.180 BT8.2: 17 residues within 4Å: Chain E: I.99, L.101, S.121, I.123, Y.143, M.144, Y.145, A.167, F.180, L.182, Y.191, Y.192, T.207, N.211, M.213, L.216, H.237 12 PLIP interactions: 12 interactions with chain E Hydrophobic interactions: E:I.99, E:I.99, E:I.123, E:Y.145, E:Y.145, E:Y.145, E:L.182, E:Y.191, E:T.207, E:N.211 Hydrogen bonds: E:L.101 pi-Stacking: E:F.180 BT8.3: 17 residues within 4Å: Chain I: I.99, L.101, S.121, I.123, Y.143, M.144, Y.145, A.167, F.180, L.182, Y.191, Y.192, T.207, N.211, M.213, L.216, H.237 12 PLIP interactions: 12 interactions with chain I Hydrophobic interactions: I:I.99, I:I.99, I:I.123, I:Y.145, I:Y.145, I:Y.145, I:L.182, I:Y.191, I:T.207, I:N.211 Hydrogen bonds: I:L.101 pi-Stacking: I:F.180 BT8.4: 17 residues within 4Å: Chain M: I.99, L.101, S.121, I.123, Y.143, M.144, Y.145, A.167, F.180, L.182, Y.191, Y.192, T.207, N.211, M.213, L.216, H.237 12 PLIP interactions: 12 interactions with chain M Hydrophobic interactions: M:I.99, M:I.99, M:I.123, M:Y.145, M:Y.145, M:Y.145, M:L.182, M:Y.191, M:T.207, M:N.211 Hydrogen bonds: M:L.101 pi-Stacking: M:F.180 BT8.5: 17 residues within 4Å: Chain Q: I.99, L.101, S.121, I.123, Y.143, M.144, Y.145, A.167, F.180, L.182, Y.191, Y.192, T.207, N.211, M.213, L.216, H.237 12 PLIP interactions: 12 interactions with chain Q Hydrophobic interactions: Q:I.99, Q:I.99, Q:I.123, Q:Y.145, Q:Y.145, Q:Y.145, Q:L.182, Q:Y.191, Q:T.207, Q:N.211 Hydrogen bonds: Q:L.101 pi-Stacking: Q:F.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feil, S.C. et al., An Orally Available 3-Ethoxybenzisoxazole Capsid Binder with Clinical Activity against Human Rhinovirus. ACS Med Chem Lett (2012)

Release Date

2012-09-12

Peptides

Protein VP1: AEIMQ
Protein VP2: BFJNR
Protein VP3: CGKOS
Protein VP4: DHLPT

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

B
B

F
B

J
B

N
B

R
B

C
C

G
C

K
C

O
C

S
C

D
D

H
D

L
D

P
D

T
D

Protein VP1

Protein VP2

Protein VP3

Protein VP4

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