SMTL ID : 3dpr.4 (3 other biounits)

Human rhinovirus 2 bound to a concatamer of the VLDL receptor module V3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x DAO: LAURIC ACID(Non-covalent)

DAO.1: 9 residues within 4Å: Chain A: I.99, N.100, L.101, Q.102, S.121, I.123, Y.145, F.180, N.211 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.99, A:I.123, A:I.123, A:Y.145, A:F.180, A:N.211 Hydrogen bonds: A:L.101, A:Q.102, A:Q.102, A:N.211 Salt bridges: A:H.259

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 7 residues within 4Å: Chain E: W.20, D.23, E.25, N.26, D.27, D.33, E.34 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:W.20, E:D.23, E:E.25, E:D.27, E:D.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Querol-Audi, J. et al., Minor group human rhinovirus-receptor interactions: geometry of multimodular attachment and basis of recognition. Febs Lett. (2009)

Release Date

2009-04-07

Peptides

Protein VP1: A
Protein VP2: B
Protein VP3: C
Protein VP4: D
LDL-receptor class A 3: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Protein VP1

Protein VP2

Protein VP3

Protein VP4

LDL-receptor class A 3

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