SMTL ID : 1fz9.1

Methane monooxygenase hydroxylase, form II cocrystallized with iodoethane

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-2-2-2-mer

Ligands

4 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: E.114, E.144, H.147, E.243 Ligands: FE.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.114, A:E.144, A:H.147, H2O.8 FE.2: 6 residues within 4Å: Chain A: Q.140, E.144, E.209, E.243, H.246 Ligands: FE.1 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.144, A:E.209, A:E.243, A:E.243, A:H.246 FE.6: 4 residues within 4Å: Chain B: E.114, E.144, H.147 Ligands: FE.7 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.114, B:E.144, B:H.147, H2O.13, H2O.13 FE.7: 5 residues within 4Å: Chain B: E.144, E.209, E.243, H.246 Ligands: FE.6 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.144, B:E.209, B:E.243, B:H.246, H2O.13

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 1 residues within 4Å: Chain A: N.527 No protein-ligand interaction detected (PLIP) CA.10: 1 residues within 4Å: Chain C: D.348 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:D.348, H2O.13, H2O.18, H2O.19 CA.11: 1 residues within 4Å: Chain C: E.222 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:E.222

8 x ETI: IODOETHANE(Non-covalent)

ETI.4: 7 residues within 4Å: Chain A: T.102, V.105, M.288, L.289, G.293, Y.347, L.361 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.105, A:L.289 Halogen bonds: A:M.288 ETI.5: 4 residues within 4Å: Chain A: V.106, L.110, L.216, L.289 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.110, A:L.216 ETI.8: 4 residues within 4Å: Chain B: V.106, L.110, L.216, L.289 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:L.216 ETI.9: 6 residues within 4Å: Chain B: T.102, M.288, L.289, G.293, F.359, L.361 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.359, B:L.361 ETI.12: 5 residues within 4Å: Chain C: Q.125 Chain D: L.102, Q.289, I.290, Q.293 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:I.290 ETI.13: 5 residues within 4Å: Chain C: Y.119 Chain D: E.116, Q.283, T.286, Y.287 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:E.116, D:Q.283, C:Y.119 ETI.14: 6 residues within 4Å: Chain C: E.116, N.282, Q.283, T.286 Chain D: Y.119, F.123 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:Y.119, C:N.282 ETI.15: 5 residues within 4Å: Chain C: Q.289, I.290, Q.293 Chain D: R.122, Q.125 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:I.290, D:Q.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Whittington, D.A. et al., Xenon and halogenated alkanes track putative substrate binding cavities in the soluble methane monooxygenase hydroxylase. Biochemistry (2001)

Release Date

2001-04-27

Peptides

METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN: AB
METHANE MONOOXYGENASE COMPONENT A, BETA CHAIN: CD
METHANE MONOOXYGENASE COMPONENT A, GAMMA CHAIN: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN

METHANE MONOOXYGENASE COMPONENT A, BETA CHAIN

METHANE MONOOXYGENASE COMPONENT A, GAMMA CHAIN

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