SMTL ID : 1g6s.1

STRUCTURE OF EPSP SYNTHASE LIGANDED WITH SHIKIMATE-3-PHOSPHATE AND GLYPHOSATE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x S3P: SHIKIMATE-3-PHOSPHATE(Non-covalent)

S3P.1: 13 residues within 4Å: Chain A: K.22, S.23, R.27, T.97, S.169, S.170, Q.171, S.197, Y.200, D.313, N.336, K.340 Ligands: GPJ.2 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:Q.171, A:Y.200, A:Y.200, A:Y.200 Hydrogen bonds: A:S.169, A:S.170, A:Q.171, A:Q.171, A:S.197, A:S.197, A:D.313, A:N.336, A:K.340, A:K.340 Water bridges: A:R.100, A:S.169, A:S.170, A:Y.200 Salt bridges: A:R.27, A:K.340

1 x GPJ: GLYPHOSATE(Non-covalent)

GPJ.2: 15 residues within 4Å: Chain A: K.22, N.94, A.95, G.96, T.97, R.100, R.124, Q.171, D.313, E.341, R.344, H.385, R.386, K.411 Ligands: S3P.1 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:K.22, A:K.22, A:G.96, A:T.97, A:R.124, A:R.124, A:Q.171, A:Q.171, A:K.411 Water bridges: A:K.22, A:D.49, A:R.100 Salt bridges: A:K.22, A:R.344, A:H.385, A:R.386

10 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 3 residues within 4Å: Chain A: P.125, Y.335, V.339 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.335 FMT.4: 4 residues within 4Å: Chain A: T.65, L.66, S.67, R.72 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.65, A:R.72 FMT.5: 3 residues within 4Å: Chain A: D.194, V.196, N.333 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.194, A:N.333 Water bridges: A:N.309 FMT.6: 3 residues within 4Å: Chain A: A.380, T.381, Y.382 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.381, A:Y.382 FMT.7: 4 residues within 4Å: Chain A: K.373, L.374, S.397, D.398 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.374, A:S.397, A:D.398 Water bridges: A:D.398 FMT.8: 2 residues within 4Å: Chain A: Y.335, H.363 No protein-ligand interaction detected (PLIP) FMT.9: 4 residues within 4Å: Chain A: T.58, V.62, S.63, Y.64 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.58, A:Y.64 FMT.10: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) FMT.11: 2 residues within 4Å: Chain A: Y.237, L.238 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.238 Water bridges: A:Y.237, A:Y.237 FMT.12: 3 residues within 4Å: Chain A: A.303, I.304, T.328 3 PLIP interactions: 3 interactions with chain A Water bridges: A:D.305, A:T.328, A:T.328

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schonbrunn, E. et al., Interaction of the herbicide glyphosate with its target enzyme 5-enolpyruvylshikimate 3-phosphate synthase in atomic detail. Proc.Natl.Acad.Sci.USA (2001)

Release Date

2001-02-07

Peptides

EPSP SYNTHASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

EPSP SYNTHASE

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