SMTL ID : 1het.1

atomic X-ray structure of liver alcohol dehydrogenase containing a hydroxide adduct to NADH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.15 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.46, H.67, C.174 Ligands: NAD.3 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:C.46, A:H.67, A:C.174, H2O.29, H2O.29 ZN.2: 5 residues within 4Å: Chain A: C.97, G.98, C.100, C.103, C.111 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.97, A:C.100, A:C.103, A:C.111 ZN.5: 4 residues within 4Å: Chain B: C.46, H.67, C.174 Ligands: NAD.7 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:C.46, B:H.67, B:C.174, H2O.55, H2O.55 ZN.6: 4 residues within 4Å: Chain B: C.97, C.100, C.103, C.111 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.97, B:C.100, B:C.103, B:C.111

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.3: 29 residues within 4Å: Chain A: C.46, R.47, S.48, H.51, C.174, T.178, G.199, L.200, G.201, G.202, V.203, D.223, I.224, N.225, K.228, V.268, I.269, R.271, V.292, G.293, V.294, A.317, I.318, F.319, L.362, R.369 Chain B: L.309 Ligands: ZN.1, MRD.4 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:T.178, A:V.203 Hydrogen bonds: A:R.47, A:H.51, A:T.178, A:L.200, A:G.201, A:G.202, A:V.203, A:I.224, A:I.269, A:R.271, A:V.292, A:V.294, A:F.319 Water bridges: A:R.47, A:R.47, A:G.204, A:K.228, A:R.271, A:R.271, A:G.320, A:R.369, A:R.369 Salt bridges: A:R.47, A:R.369 NAD.7: 30 residues within 4Å: Chain B: C.46, R.47, S.48, H.51, C.174, T.178, G.199, L.200, G.201, G.202, V.203, V.222, D.223, I.224, N.225, K.228, V.268, I.269, R.271, T.274, V.292, G.293, V.294, A.317, I.318, F.319, L.362, R.369 Ligands: ZN.5, MRD.8 26 PLIP interactions: 26 interactions with chain B Hydrophobic interactions: B:T.178, B:V.203 Hydrogen bonds: B:R.47, B:H.51, B:L.200, B:G.201, B:G.202, B:V.203, B:I.224, B:I.269, B:V.292, B:V.294, B:F.319 Water bridges: B:R.47, B:G.204, B:K.228, B:K.228, B:K.228, B:R.271, B:R.271, B:G.320, B:R.369, B:R.369 Salt bridges: B:R.47, B:K.228, B:R.369

3 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.4: 8 residues within 4Å: Chain A: S.48, L.57, H.67, F.93, L.116, L.141, V.294 Ligands: NAD.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.93, A:L.116, A:L.116 Hydrogen bonds: A:S.48, A:S.48 MRD.8: 8 residues within 4Å: Chain B: S.48, L.57, H.67, F.93, L.116, L.141, V.294 Ligands: NAD.7 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.93, B:L.116, B:L.116 Hydrogen bonds: B:S.48, B:S.48 MRD.9: 3 residues within 4Å: Chain B: R.218, T.238, E.239 1 PLIP interactions: 1 interactions with chain B Water bridges: B:R.218

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meijers, R. et al., On the Enzymatic Activation of Nadh. J.Biol.Chem. (2001)

Release Date

2001-05-31

Peptides

ALCOHOL DEHYDROGENASE E CHAIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ALCOHOL DEHYDROGENASE E CHAIN

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