SMTL ID : 1jpg.1

Crystal Structure Of The LCMV Peptidic Epitope Np396 In Complex With The Murine Class I Mhc Molecule H-2Db

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PHE- GLN- PRO- GLN- ASN- GLY- GLN- PHE- ILE: LCMV peptidic epitope np396(Non-covalent)

PHE-GLN-PRO-GLN-ASN-GLY-GLN-PHE-ILE.1: 28 residues within 4Å: Chain A: Y.8, E.10, Y.23, S.25, Y.46, E.64, K.67, Q.71, W.74, F.75, V.77, S.78, N.81, L.82, Y.85, Q.98, S.100, Y.124, T.144, K.147, W.148, S.151, H.156, Y.157, Y.160, E.164, W.168, Y.172 42 PLIP interactions: 42 interactions with chain A Hydrophobic interactions: A:Y.46, A:K.67, A:W.74, A:W.74, A:W.74, A:V.77, A:V.77, A:L.82, A:L.82, A:Y.85, A:Y.124, A:T.144, A:W.148, A:Y.160, A:E.164, A:E.164, A:W.168, A:W.168 Hydrogen bonds: A:E.10, A:Y.23, A:S.25, A:E.64, A:K.67, A:Q.71, A:Q.71, A:S.78, A:N.81, A:Y.85, A:Q.98, A:Q.98, A:T.144, A:K.147, A:K.147, A:S.151, A:Y.157, A:Y.157, A:Y.160, A:Y.172 Water bridges: A:Y.60 Salt bridges: A:K.147 pi-Stacking: A:W.168 pi-Cation interactions: A:K.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ciatto, C. et al., Zooming in on the hydrophobic ridge of H-2D(b): implications for the conformational variability of bound peptides. J.Mol.Biol. (2001)

Release Date

2001-10-24

Peptides

H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN: A
BETA-2-MICROGLOBULIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN

BETA-2-MICROGLOBULIN

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