SMTL ID : 1n86.1

Crystal structure of human D-dimer from cross-linked fibrin complexed with GPR and GHRPLDK peptide ligands.

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 3.20 Å
Oligo State
hetero-oligomer
Ligands
2 x GLY- PRO- ARG: fibrin alpha chain peptide ligand fragment Gly-Pro-Arg(Non-covalent)
2 x GLY- HIS- ARG- PRO: fibrin beta chain peptide ligand fragment Gly-His-Arg-Pro-Leu-Asp-Lys(Non-covalent)
4 x NDG: SUGAR (N-ACETYL-D-GLUCOSAMINE)(Non-covalent)(Non-functional Binders)
1 x MAN: SUGAR (ALPHA-D-MANNOSE)(Non-functional Binders)
4 x CA: CALCIUM ION(Non-covalent)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Yang, Z. et al., The crystal structure of fragment double-D from cross-linked lamprey fibrin reveals isopeptide linkages across an unexpected D-D interface. Biochemistry (2002)
Release Date
2003-01-07
Peptides
Fibrin alpha/alpha-E chain: AD
Fibrin beta chain: BE
Fibrin gamma chain: CF
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
D
D
B
B
E
E
C
C
F
F

Fibrin alpha/alpha-E chain

Toggle Identical (AD)

Fibrin beta chain

Toggle Identical (BE)

Fibrin gamma chain

Toggle Identical (CF)

Related Entries With Identical Sequence

1fza.1 | 1fzb.1 | 1fzc.1 | 1fze.1 | 1fze.2 | 1fze.3 | 1fzf.1 | 1fzg.1 | 2h43.1 | 2h43.2 | 2hlo.1 | 2hlo.2 | 2hod.1 | 2hod.2 | 2hod.3 | 2hod.4 | 2hpc.1 | 2hpc.2 | 2hpc.3 | 2hpc.4 | 2q9i.1 | 2q9i.2 | 2xnx.1 | 2xny.1 | 2xny.2 | 2z4e.1 | 2z4e.2 | 3e1i.1 | 3e1i.2