SMTL ID : 1n92.1

Horse Liver Alcohol Dehydrogenase Complexed with NAD+ and 4-Iodopyrazole

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.46, H.67, C.174 Ligands: NAJ.3, PYZ.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.46, A:H.67, A:C.174 ZN.2: 6 residues within 4Å: Chain A: C.97, G.98, C.100, C.103, C.111, L.112 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.97, A:C.100, A:C.103, A:C.111 ZN.6: 5 residues within 4Å: Chain B: C.46, H.67, C.174 Ligands: NAJ.8, PYZ.9 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.46, B:H.67, B:C.174 ZN.7: 5 residues within 4Å: Chain B: C.97, C.100, C.103, C.111, L.112 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.97, B:C.100, B:C.103, B:C.111

2 x NAJ: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM)(Non-covalent)

NAJ.3: 31 residues within 4Å: Chain A: C.46, R.47, S.48, H.51, F.93, C.174, T.178, G.199, L.200, G.201, G.202, V.203, D.223, I.224, N.225, K.228, V.268, I.269, G.270, R.271, V.292, G.293, V.294, A.317, I.318, F.319, L.362, R.369 Chain B: L.309 Ligands: ZN.1, PYZ.4 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:T.178, A:V.203 Hydrogen bonds: A:R.47, A:H.51, A:T.178, A:L.200, A:G.201, A:G.202, A:V.203, A:I.224, A:I.269, A:R.271, A:V.292, A:V.294, A:F.319 Water bridges: A:G.204, A:K.228, A:K.228, A:K.228, A:K.228, A:K.228, A:R.271, A:G.320, A:R.369, A:R.369 Salt bridges: A:R.47, A:K.228, A:R.369 NAJ.8: 30 residues within 4Å: Chain B: C.46, R.47, S.48, H.51, C.174, T.178, G.199, L.200, G.201, G.202, V.203, V.222, D.223, I.224, N.225, K.228, V.268, I.269, G.270, R.271, V.292, G.293, V.294, A.317, I.318, F.319, L.362, R.369 Ligands: ZN.6, PYZ.9 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:T.178, B:V.203 Hydrogen bonds: B:R.47, B:H.51, B:L.200, B:G.201, B:G.202, B:V.203, B:I.224, B:I.269, B:R.271, B:V.292, B:V.294, B:F.319 Water bridges: B:R.47, B:R.47, B:G.204, B:R.271, B:G.320, B:S.367, B:R.369, B:R.369 Salt bridges: B:R.47, B:R.369

2 x PYZ: 4-IODOPYRAZOLE(Non-covalent)

PYZ.4: 9 residues within 4Å: Chain A: C.46, S.48, H.67, F.93, L.116, L.141, C.174 Ligands: ZN.1, NAJ.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.48 pi-Stacking: A:F.93 PYZ.9: 9 residues within 4Å: Chain B: C.46, S.48, H.67, F.93, L.116, L.141, C.174 Ligands: ZN.6, NAJ.8 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.48 pi-Stacking: B:F.93

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.5: 3 residues within 4Å: Chain A: R.218, T.238, E.239 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:E.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rubach, J.K. et al., Amino Acid Residues in the Nicotinamide Binding Site Contribute to Catalysis by Horse Liver Alcohol Dehydrogenase. Biochemistry (2003)

Release Date

2003-02-04

Peptides

Alcohol Dehydrogenase E chain: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alcohol Dehydrogenase E chain

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