- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- hetero-oligomer
- Ligands
- 18 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x OXY: OXYGEN MOLECULE(Non-covalent)
OXY.4: 6 residues within 4Å:- Chain A: N.201, H.208, H.213, F.352, D.362
- Ligands: FE.7
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.201
OXY.16: 6 residues within 4Å:- Chain C: N.201, H.208, H.213, F.352, D.362
- Ligands: FE.19
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.201
OXY.28: 6 residues within 4Å:- Chain E: N.201, H.208, H.213, F.352, D.362
- Ligands: FE.31
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:N.201, E:H.208
- 9 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 4 residues within 4Å:- Chain A: L.128, N.129, K.130, K.131
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:N.129, A:K.130, A:K.131
- Water bridges: A:E.120, A:K.130
- Salt bridges: A:K.130, A:K.131
SO4.10: 2 residues within 4Å:- Chain B: Q.63, Q.65
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Q.63, B:Q.65
- Water bridges: B:Q.65
SO4.11: 5 residues within 4Å:- Chain B: G.59, S.60, E.61, E.167, K.172
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.60, B:E.167
- Salt bridges: B:K.172
SO4.17: 4 residues within 4Å:- Chain C: L.128, N.129, K.130, K.131
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:N.129, C:K.130, C:K.131
- Water bridges: C:E.120, C:K.130
- Salt bridges: C:K.130, C:K.131
SO4.22: 2 residues within 4Å:- Chain D: Q.63, Q.65
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:Q.63, D:Q.65
- Water bridges: D:Q.65
SO4.23: 5 residues within 4Å:- Chain D: G.59, S.60, E.61, E.167, K.172
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:S.60, D:E.167
- Salt bridges: D:K.172
SO4.29: 4 residues within 4Å:- Chain E: L.128, N.129, K.130, K.131
7 PLIP interactions:7 interactions with chain E- Hydrogen bonds: E:N.129, E:K.130, E:K.131
- Water bridges: E:E.120, E:K.130
- Salt bridges: E:K.130, E:K.131
SO4.34: 2 residues within 4Å:- Chain F: Q.63, Q.65
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:Q.63, F:Q.65
SO4.35: 5 residues within 4Å:- Chain F: G.59, S.60, E.61, E.167, K.172
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:S.60, F:E.167
- Salt bridges: F:K.172
- 3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.6: 10 residues within 4Å:- Chain A: C.81, H.83, R.84, G.85, K.86, C.101, Y.103, H.104, G.105, W.106
4 PLIP interactions:4 interactions with chain A,- Metal complexes: A:C.81, A:H.83, A:C.101, A:H.104
FES.18: 10 residues within 4Å:- Chain C: C.81, H.83, R.84, G.85, K.86, C.101, Y.103, H.104, G.105, W.106
4 PLIP interactions:4 interactions with chain C,- Metal complexes: C:C.81, C:H.83, C:C.101, C:H.104
FES.30: 10 residues within 4Å:- Chain E: C.81, H.83, R.84, G.85, K.86, C.101, Y.103, H.104, G.105, W.106
4 PLIP interactions:4 interactions with chain E,- Metal complexes: E:C.81, E:H.83, E:C.101, E:H.104
- 3 x FE: FE (III) ION(Non-covalent)
FE.7: 5 residues within 4Å:- Chain A: N.201, H.208, H.213, D.362
- Ligands: OXY.4
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:H.208, A:H.213, A:D.362, A:D.362
FE.19: 5 residues within 4Å:- Chain C: N.201, H.208, H.213, D.362
- Ligands: OXY.16
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:H.208, C:H.213, C:D.362, C:D.362
FE.31: 5 residues within 4Å:- Chain E: N.201, H.208, H.213, D.362
- Ligands: OXY.28
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:H.208, E:H.213, E:D.362, E:D.362
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Karlsson, A. et al., Crystal Structure of Naphthalene Dioxygenase: Side-on Binding of Dioxygen to Iron. Science (2003)
- Release Date
- 2003-02-20
- Peptides
- NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT: ACE
NAPHTHALENE 1,2-DIOXYGENASE BETA SUBUNIT: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AB
BD
BF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- hetero-oligomer
- Ligands
- 18 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x OXY: OXYGEN MOLECULE(Non-covalent)
- 9 x SO4: SULFATE ION(Non-functional Binders)
- 3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 3 x FE: FE (III) ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Karlsson, A. et al., Crystal Structure of Naphthalene Dioxygenase: Side-on Binding of Dioxygen to Iron. Science (2003)
- Release Date
- 2003-02-20
- Peptides
- NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT: ACE
NAPHTHALENE 1,2-DIOXYGENASE BETA SUBUNIT: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AB
BD
BF
B