SMTL ID : 1rdt.1

Crystal Structure of a new rexinoid bound to the RXRalpha ligand binding doamin in the RXRalpha/PPARgamma heterodimer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x L79: (S)-(2E)-3[4-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO-2-NAPHTHALENYL)TETRAHYDRO-1-BENZOFURAN-2-YL]-2-PROPENOIC ACID(Non-covalent)

L79.1: 17 residues within 4Å: Chain A: I.48, A.51, A.52, Q.55, W.85, N.86, L.89, F.93, R.96, L.106, A.107, V.122, I.125, F.126, V.129, H.215, L.216 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.48, A:I.48, A:A.52, A:Q.55, A:W.85, A:L.89, A:F.93, A:F.93, A:L.106, A:V.122, A:V.122, A:F.126, A:V.129, A:H.215, A:L.216 Hydrogen bonds: A:A.107 Salt bridges: A:R.96

1 x 570: 2-(2-BENZOYL-PHENYLAMINO)-3-{4-[2-(5-METHYL-2-PHENYL-OXAZOL-4-YL)-ETHOXY]-PHENYL}-PROPIONIC ACID(Non-covalent)

570.2: 20 residues within 4Å: Chain C: I.88, F.89, G.91, C.92, Q.93, S.96, H.130, I.133, Y.134, L.137, I.148, M.155, L.160, F.167, F.170, M.171, H.256, L.272, L.276, Y.280 20 PLIP interactions: 20 interactions with chain C Hydrophobic interactions: C:I.88, C:F.89, C:Q.93, C:I.133, C:L.137, C:I.148, C:L.160, C:F.167, C:L.272, C:L.276 Hydrogen bonds: C:S.96, C:Y.134, C:Y.134, C:H.256, C:Y.280 Water bridges: C:S.149 Salt bridges: C:H.130, C:H.256 pi-Stacking: C:F.89, C:F.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Haffner, C.D. et al., Structure-based design of potent retinoid X receptor alpha agonists. J.Med.Chem. (2004)

Release Date

2004-11-09

Peptides

Retinoic acid receptor RXR-alpha: A
LxxLL motif coactivator: B
Peroxisome proliferator activated receptor gamma: C
LxxLL motif coactivator: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
E

Retinoic acid receptor RXR-alpha

LxxLL motif coactivator

Peroxisome proliferator activated receptor gamma

LxxLL motif coactivator

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