SMTL ID : 1s3b.2 (1 other biounit)

Crystal structure of MAOB in complex with N-methyl-N-propargyl-1(R)-aminoindan

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.1: 38 residues within 4Å: Chain A: V.10, G.11, G.12, G.13, I.14, S.15, L.33, E.34, A.35, R.36, G.40, G.41, R.42, T.43, L.56, G.57, G.58, S.59, Y.60, R.233, P.234, V.235, A.263, I.264, P.265, L.268, V.294, W.388, Y.393, C.397, Y.398, G.425, T.426, G.434, Y.435, M.436, A.439 Ligands: RMA.2 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:V.294, A:W.388, A:Y.398, A:Y.398 Hydrogen bonds: A:G.12, A:G.13, A:S.15, A:A.35, A:R.36, A:G.40, A:R.42, A:G.58, A:S.59, A:Y.60, A:Y.60, A:V.235, A:V.235, A:T.426, A:T.426, A:G.434, A:M.436 Water bridges: A:I.14, A:G.16, A:E.34, A:E.34, A:R.42, A:R.42, A:T.43, A:E.437 Salt bridges: A:R.42, A:R.42 pi-Stacking: A:Y.393 FAD.3: 37 residues within 4Å: Chain B: V.10, G.11, G.12, G.13, I.14, S.15, L.33, E.34, A.35, R.36, G.40, G.41, R.42, T.43, L.56, G.57, G.58, S.59, Y.60, R.233, P.234, V.235, A.263, I.264, P.265, L.268, W.388, Y.393, C.397, Y.398, G.425, T.426, G.434, Y.435, M.436, A.439 Ligands: RMA.4 30 PLIP interactions: 30 interactions with chain B Hydrophobic interactions: B:W.388, B:Y.398, B:Y.398 Hydrogen bonds: B:G.12, B:G.13, B:S.15, B:A.35, B:R.36, B:G.40, B:R.42, B:G.58, B:S.59, B:Y.60, B:Y.60, B:V.235, B:V.235, B:T.426, B:G.434, B:M.436 Water bridges: B:I.14, B:G.16, B:E.34, B:E.34, B:R.42, B:R.42, B:T.43, B:E.437 Salt bridges: B:R.42, B:R.42 pi-Stacking: B:Y.393 FAD.5: 38 residues within 4Å: Chain C: V.10, G.11, G.12, G.13, I.14, S.15, L.33, E.34, A.35, R.36, G.40, G.41, R.42, T.43, L.56, G.57, G.58, S.59, Y.60, R.233, P.234, V.235, A.263, I.264, P.265, L.268, V.294, W.388, Y.393, C.397, Y.398, G.425, T.426, G.434, Y.435, M.436, A.439 Ligands: RMA.6 32 PLIP interactions: 32 interactions with chain C Hydrophobic interactions: C:V.294, C:W.388, C:Y.398, C:Y.398 Hydrogen bonds: C:G.12, C:G.13, C:S.15, C:A.35, C:R.36, C:G.40, C:R.42, C:G.58, C:S.59, C:Y.60, C:Y.60, C:V.235, C:V.235, C:T.426, C:T.426, C:G.434, C:M.436 Water bridges: C:I.14, C:G.16, C:E.34, C:E.34, C:R.42, C:R.42, C:T.43, C:E.437 Salt bridges: C:R.42, C:R.42 pi-Stacking: C:Y.393 FAD.7: 37 residues within 4Å: Chain D: V.10, G.11, G.12, G.13, I.14, S.15, L.33, E.34, A.35, R.36, G.40, G.41, R.42, T.43, L.56, G.57, G.58, S.59, Y.60, R.233, P.234, V.235, A.263, I.264, P.265, L.268, W.388, Y.393, C.397, Y.398, G.425, T.426, G.434, Y.435, M.436, A.439 Ligands: RMA.8 30 PLIP interactions: 30 interactions with chain D Hydrophobic interactions: D:W.388, D:Y.398, D:Y.398 Hydrogen bonds: D:G.12, D:G.13, D:S.15, D:A.35, D:R.36, D:G.40, D:R.42, D:G.58, D:S.59, D:Y.60, D:Y.60, D:V.235, D:V.235, D:T.426, D:G.434, D:M.436 Water bridges: D:I.14, D:G.16, D:E.34, D:E.34, D:R.42, D:R.42, D:T.43, D:E.437 Salt bridges: D:R.42, D:R.42 pi-Stacking: D:Y.393

4 x RMA: N-[(1S)-2,3-DIHYDRO-1H-INDEN-1-YL]-N-METHYL-N-PROP-2-YNYLAMINE(Non-covalent)

RMA.2: 10 residues within 4Å: Chain A: L.171, C.172, I.198, I.199, Q.206, Y.326, F.343, Y.398, Y.435 Ligands: FAD.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.171, A:L.171, A:I.198, A:Q.206, A:Y.326, A:F.343, A:Y.398 RMA.4: 9 residues within 4Å: Chain B: L.171, C.172, I.198, I.199, Q.206, Y.326, F.343, Y.398 Ligands: FAD.3 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:L.171, B:L.171, B:I.198, B:Q.206, B:Y.326, B:F.343, B:Y.398 RMA.6: 10 residues within 4Å: Chain C: L.171, C.172, I.198, I.199, Q.206, Y.326, F.343, Y.398, Y.435 Ligands: FAD.5 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:L.171, C:L.171, C:I.198, C:Q.206, C:Y.326, C:F.343, C:Y.398 RMA.8: 9 residues within 4Å: Chain D: L.171, C.172, I.198, I.199, Q.206, Y.326, F.343, Y.398 Ligands: FAD.7 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:L.171, D:L.171, D:I.198, D:Q.206, D:Y.326, D:F.343, D:Y.398

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Binda, C. et al., Crystal Structures of Monoamine Oxidase B in Complex with Four Inhibitors of the N-Propargylaminoindan Class. J.Med.Chem. (2004)

Release Date

2004-03-30

Peptides

Amine oxidase [flavin-containing] B: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Amine oxidase [flavin-containing] B

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