- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FA8: [[(2R,3S,4S)-5-[(4AS)-7,8-DIMETHYL-2,4-DIOXO-4A,5-DIHYDROBENZO[G]PTERIDIN-10-YL]-2,3,4-TRIHYDROXY-PENTOXY]-HYDROXY-PHOSPHORYL] [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL HYDROGEN PHOSPHATE(Covalent)
- 4 x 3PL: 3-PHENYLPROPANAL(Non-covalent)
3PL.2: 8 residues within 4Å:- Chain A: Y.60, C.172, Y.188, Q.206, F.343, Y.398, Y.435
- Ligands: FA8.1
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:Y.60, A:Q.206, A:F.343, A:Y.398, A:Y.435
- pi-Stacking: A:Y.398
3PL.6: 8 residues within 4Å:- Chain B: Y.60, C.172, Y.188, Q.206, F.343, Y.398, Y.435
- Ligands: FA8.5
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:Y.60, B:Q.206, B:F.343, B:Y.398
- Water bridges: B:Y.435
- pi-Stacking: B:Y.398
3PL.10: 8 residues within 4Å:- Chain C: Y.60, C.172, Y.188, Q.206, F.343, Y.398, Y.435
- Ligands: FA8.9
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:Y.60, C:Q.206, C:F.343, C:Y.398, C:Y.435
- pi-Stacking: C:Y.398
3PL.14: 8 residues within 4Å:- Chain D: Y.60, C.172, Y.188, Q.206, F.343, Y.398, Y.435
- Ligands: FA8.13
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:Y.60, D:Q.206, D:F.343, D:Y.398
- Water bridges: D:Y.435
- pi-Stacking: D:Y.398
- 4 x XCG: 2-(2-BENZOFURANYL)-2-IMIDAZOLINE(Non-covalent)
XCG.3: 11 residues within 4Å:- Chain A: L.88, G.101, P.102, L.164, L.167, F.168, L.171, I.199, T.201, I.316, Y.326
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:L.164, A:L.167, A:F.168, A:L.171, A:I.199, A:I.316, A:I.316
- Hydrogen bonds: A:P.102
XCG.7: 11 residues within 4Å:- Chain B: L.88, G.101, P.102, L.164, L.167, F.168, L.171, I.199, T.201, I.316, Y.326
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:L.164, B:L.167, B:F.168, B:L.171, B:I.199, B:I.316
- Hydrogen bonds: B:Y.326
XCG.11: 11 residues within 4Å:- Chain C: L.88, G.101, P.102, L.164, L.167, F.168, L.171, I.199, T.201, I.316, Y.326
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:L.164, C:L.167, C:F.168, C:L.171, C:I.199, C:I.316, C:I.316
- Hydrogen bonds: C:P.102
XCG.15: 11 residues within 4Å:- Chain D: L.88, G.101, P.102, L.164, L.167, F.168, L.171, I.199, T.201, I.316, Y.326
7 PLIP interactions:7 interactions with chain D- Hydrophobic interactions: D:L.164, D:L.167, D:F.168, D:L.171, D:I.199, D:I.316
- Hydrogen bonds: D:Y.326
- 4 x C15: N-DODECYL-N,N-DIMETHYL-3-AMMONIO-1-PROPANESULFONATE(Non-covalent)
C15.4: 6 residues within 4Å:- Chain A: D.153, K.154, C.156, W.157
- Chain C: W.107, P.109
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: A:W.157, C:P.109
- Water bridges: A:K.154
- pi-Cation interactions: A:W.157, A:W.157
C15.8: 4 residues within 4Å:- Chain B: D.153, K.154, C.156, W.157
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:W.157
- Water bridges: B:K.154
- Salt bridges: B:K.154
- pi-Cation interactions: B:W.157, B:W.157
C15.12: 6 residues within 4Å:- Chain A: W.107, P.109
- Chain C: D.153, K.154, C.156, W.157
5 PLIP interactions:4 interactions with chain C, 1 interactions with chain A- Hydrophobic interactions: C:W.157, A:P.109
- Water bridges: C:K.154
- pi-Cation interactions: C:W.157, C:W.157
C15.16: 4 residues within 4Å:- Chain D: D.153, K.154, C.156, W.157
5 PLIP interactions:5 interactions with chain D- Hydrophobic interactions: D:W.157
- Water bridges: D:K.154
- Salt bridges: D:K.154
- pi-Cation interactions: D:W.157, D:W.157
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bonivento, D. et al., Potentiation of ligand binding through cooperative effects in monoamine oxidase B. J. Biol. Chem. (2010)
- Release Date
- 2010-10-06
- Peptides
- Amine oxidase [flavin-containing] B: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FA8: [[(2R,3S,4S)-5-[(4AS)-7,8-DIMETHYL-2,4-DIOXO-4A,5-DIHYDROBENZO[G]PTERIDIN-10-YL]-2,3,4-TRIHYDROXY-PENTOXY]-HYDROXY-PHOSPHORYL] [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL HYDROGEN PHOSPHATE(Covalent)
- 4 x 3PL: 3-PHENYLPROPANAL(Non-covalent)
- 4 x XCG: 2-(2-BENZOFURANYL)-2-IMIDAZOLINE(Non-covalent)
- 4 x C15: N-DODECYL-N,N-DIMETHYL-3-AMMONIO-1-PROPANESULFONATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bonivento, D. et al., Potentiation of ligand binding through cooperative effects in monoamine oxidase B. J. Biol. Chem. (2010)
- Release Date
- 2010-10-06
- Peptides
- Amine oxidase [flavin-containing] B: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B