SMTL ID : 2xcg.2 (1 other biounit)

Tranylcypromine-inhibited human monoamine oxidase B in complex with 2- (2-benzofuranyl)-2-imidazoline

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x FA8: [[(2R,3S,4S)-5-[(4AS)-7,8-DIMETHYL-2,4-DIOXO-4A,5-DIHYDROBENZO[G]PTERIDIN-10-YL]-2,3,4-TRIHYDROXY-PENTOXY]-HYDROXY-PHOSPHORYL] [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL HYDROGEN PHOSPHATE(Covalent)

FA8.1: 37 residues within 4Å: Chain A: V.10, G.11, G.12, G.13, I.14, S.15, L.33, E.34, A.35, R.36, G.40, G.41, R.42, T.43, G.57, G.58, S.59, Y.60, R.233, P.234, V.235, A.263, I.264, P.265, L.268, V.294, W.388, Y.393, C.397, Y.398, G.425, T.426, G.434, Y.435, M.436, A.439 Ligands: 3PL.2 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:V.294, A:W.388, A:Y.398 Hydrogen bonds: A:G.12, A:G.13, A:S.15, A:A.35, A:R.36, A:G.40, A:R.42, A:G.58, A:S.59, A:Y.60, A:Y.60, A:V.235, A:V.235, A:T.426, A:T.426, A:G.434, A:M.436 Water bridges: A:I.14, A:G.16, A:E.34, A:E.34, A:R.42, A:R.42, A:T.43, A:Q.65, A:E.437 Salt bridges: A:R.42, A:R.42 pi-Stacking: A:Y.393 FA8.5: 37 residues within 4Å: Chain B: V.10, G.11, G.12, G.13, I.14, S.15, L.33, E.34, A.35, R.36, G.40, G.41, R.42, T.43, G.57, G.58, S.59, Y.60, R.233, P.234, V.235, A.263, I.264, P.265, L.268, V.294, W.388, Y.393, C.397, Y.398, G.425, T.426, G.434, Y.435, M.436, A.439 Ligands: 3PL.6 32 PLIP interactions: 32 interactions with chain B Hydrophobic interactions: B:V.294, B:W.388, B:Y.398 Hydrogen bonds: B:G.12, B:G.13, B:S.15, B:A.35, B:R.36, B:G.40, B:R.42, B:T.43, B:G.58, B:S.59, B:Y.60, B:Y.60, B:V.235, B:V.235, B:T.426, B:G.434, B:M.436 Water bridges: B:I.14, B:I.14, B:G.16, B:E.34, B:E.34, B:R.42, B:R.42, B:Q.65, B:E.437 Salt bridges: B:R.42, B:R.42 pi-Stacking: B:Y.393 FA8.9: 37 residues within 4Å: Chain C: V.10, G.11, G.12, G.13, I.14, S.15, L.33, E.34, A.35, R.36, G.40, G.41, R.42, T.43, G.57, G.58, S.59, Y.60, R.233, P.234, V.235, A.263, I.264, P.265, L.268, V.294, W.388, Y.393, C.397, Y.398, G.425, T.426, G.434, Y.435, M.436, A.439 Ligands: 3PL.10 32 PLIP interactions: 32 interactions with chain C Hydrophobic interactions: C:V.294, C:W.388, C:Y.398 Hydrogen bonds: C:G.12, C:G.13, C:S.15, C:A.35, C:R.36, C:G.40, C:R.42, C:G.58, C:S.59, C:Y.60, C:Y.60, C:V.235, C:V.235, C:T.426, C:T.426, C:G.434, C:M.436 Water bridges: C:I.14, C:G.16, C:E.34, C:E.34, C:R.42, C:R.42, C:T.43, C:Q.65, C:E.437 Salt bridges: C:R.42, C:R.42 pi-Stacking: C:Y.393 FA8.13: 37 residues within 4Å: Chain D: V.10, G.11, G.12, G.13, I.14, S.15, L.33, E.34, A.35, R.36, G.40, G.41, R.42, T.43, G.57, G.58, S.59, Y.60, R.233, P.234, V.235, A.263, I.264, P.265, L.268, V.294, W.388, Y.393, C.397, Y.398, G.425, T.426, G.434, Y.435, M.436, A.439 Ligands: 3PL.14 32 PLIP interactions: 32 interactions with chain D Hydrophobic interactions: D:V.294, D:W.388, D:Y.398 Hydrogen bonds: D:G.12, D:G.13, D:S.15, D:A.35, D:R.36, D:G.40, D:R.42, D:T.43, D:G.58, D:S.59, D:Y.60, D:Y.60, D:V.235, D:V.235, D:T.426, D:G.434, D:M.436 Water bridges: D:I.14, D:I.14, D:G.16, D:E.34, D:E.34, D:R.42, D:R.42, D:Q.65, D:E.437 Salt bridges: D:R.42, D:R.42 pi-Stacking: D:Y.393

4 x 3PL: 3-PHENYLPROPANAL(Non-covalent)

3PL.2: 8 residues within 4Å: Chain A: Y.60, C.172, Y.188, Q.206, F.343, Y.398, Y.435 Ligands: FA8.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.60, A:Q.206, A:F.343, A:Y.398, A:Y.435 pi-Stacking: A:Y.398 3PL.6: 8 residues within 4Å: Chain B: Y.60, C.172, Y.188, Q.206, F.343, Y.398, Y.435 Ligands: FA8.5 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:Y.60, B:Q.206, B:F.343, B:Y.398 Water bridges: B:Y.435 pi-Stacking: B:Y.398 3PL.10: 8 residues within 4Å: Chain C: Y.60, C.172, Y.188, Q.206, F.343, Y.398, Y.435 Ligands: FA8.9 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:Y.60, C:Q.206, C:F.343, C:Y.398, C:Y.435 pi-Stacking: C:Y.398 3PL.14: 8 residues within 4Å: Chain D: Y.60, C.172, Y.188, Q.206, F.343, Y.398, Y.435 Ligands: FA8.13 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:Y.60, D:Q.206, D:F.343, D:Y.398 Water bridges: D:Y.435 pi-Stacking: D:Y.398

4 x XCG: 2-(2-BENZOFURANYL)-2-IMIDAZOLINE(Non-covalent)

XCG.3: 11 residues within 4Å: Chain A: L.88, G.101, P.102, L.164, L.167, F.168, L.171, I.199, T.201, I.316, Y.326 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.164, A:L.167, A:F.168, A:L.171, A:I.199, A:I.316, A:I.316 Hydrogen bonds: A:P.102 XCG.7: 11 residues within 4Å: Chain B: L.88, G.101, P.102, L.164, L.167, F.168, L.171, I.199, T.201, I.316, Y.326 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:L.164, B:L.167, B:F.168, B:L.171, B:I.199, B:I.316 Hydrogen bonds: B:Y.326 XCG.11: 11 residues within 4Å: Chain C: L.88, G.101, P.102, L.164, L.167, F.168, L.171, I.199, T.201, I.316, Y.326 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:L.164, C:L.167, C:F.168, C:L.171, C:I.199, C:I.316, C:I.316 Hydrogen bonds: C:P.102 XCG.15: 11 residues within 4Å: Chain D: L.88, G.101, P.102, L.164, L.167, F.168, L.171, I.199, T.201, I.316, Y.326 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:L.164, D:L.167, D:F.168, D:L.171, D:I.199, D:I.316 Hydrogen bonds: D:Y.326

4 x C15: N-DODECYL-N,N-DIMETHYL-3-AMMONIO-1-PROPANESULFONATE(Non-covalent)

C15.4: 6 residues within 4Å: Chain A: D.153, K.154, C.156, W.157 Chain C: W.107, P.109 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:W.157, C:P.109 Water bridges: A:K.154 pi-Cation interactions: A:W.157, A:W.157 C15.8: 4 residues within 4Å: Chain B: D.153, K.154, C.156, W.157 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:W.157 Water bridges: B:K.154 Salt bridges: B:K.154 pi-Cation interactions: B:W.157, B:W.157 C15.12: 6 residues within 4Å: Chain A: W.107, P.109 Chain C: D.153, K.154, C.156, W.157 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:W.157, A:P.109 Water bridges: C:K.154 pi-Cation interactions: C:W.157, C:W.157 C15.16: 4 residues within 4Å: Chain D: D.153, K.154, C.156, W.157 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:W.157 Water bridges: D:K.154 Salt bridges: D:K.154 pi-Cation interactions: D:W.157, D:W.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bonivento, D. et al., Potentiation of ligand binding through cooperative effects in monoamine oxidase B. J. Biol. Chem. (2010)

Release Date

2010-10-06

Peptides

Amine oxidase [flavin-containing] B: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Amine oxidase [flavin-containing] B

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