SMTL ID : 2v5z.1

Structure of human MAO B in complex with the selective inhibitor safinamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 38 residues within 4Å: Chain A: V.10, G.11, G.12, G.13, I.14, S.15, L.33, E.34, A.35, R.36, G.40, G.41, R.42, T.43, L.56, G.57, G.58, S.59, Y.60, R.233, P.234, V.235, A.263, I.264, P.265, L.268, K.296, W.388, Y.393, C.397, Y.398, G.425, T.426, G.434, Y.435, M.436, A.439 Ligands: SAG.2 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:K.296, A:W.388, A:Y.398 Hydrogen bonds: A:G.12, A:G.13, A:S.15, A:A.35, A:R.36, A:R.42, A:G.58, A:S.59, A:Y.60, A:Y.60, A:V.235, A:V.235, A:T.426, A:T.426, A:G.434, A:M.436 Water bridges: A:I.14, A:G.16, A:G.41, A:R.42, A:R.42, A:T.43, A:Q.65, A:E.437 Salt bridges: A:R.42, A:R.42 pi-Stacking: A:Y.393 FAD.3: 38 residues within 4Å: Chain B: V.10, G.11, G.12, G.13, I.14, S.15, L.33, E.34, A.35, R.36, G.40, G.41, R.42, T.43, L.56, G.57, G.58, S.59, Y.60, R.233, P.234, V.235, A.263, I.264, P.265, L.268, K.296, W.388, Y.393, C.397, Y.398, G.425, T.426, G.434, Y.435, M.436, A.439 Ligands: SAG.4 30 PLIP interactions: 30 interactions with chain B Hydrophobic interactions: B:K.296, B:W.388, B:Y.398 Hydrogen bonds: B:G.12, B:G.13, B:S.15, B:A.35, B:R.36, B:R.42, B:G.58, B:S.59, B:Y.60, B:Y.60, B:V.235, B:V.235, B:T.426, B:G.434, B:M.436 Water bridges: B:I.14, B:I.14, B:G.16, B:E.34, B:E.34, B:R.42, B:R.42, B:Q.65, B:E.437 Salt bridges: B:R.42, B:R.42 pi-Stacking: B:Y.393

2 x SAG: (S)-(+)-2-[4-(FLUOROBENZYLOXY-BENZYLAMINO)PROPIONAMIDE](Non-covalent)

SAG.2: 15 residues within 4Å: Chain A: P.102, W.119, L.164, F.168, L.171, C.172, I.198, I.199, Q.206, I.316, Y.326, F.343, Y.398, Y.435 Ligands: FAD.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.171, A:I.199, A:I.199, A:I.316, A:Y.326, A:F.343, A:Y.398 Hydrogen bonds: A:Q.206 Water bridges: A:Q.206 Halogen bonds: A:L.164 SAG.4: 15 residues within 4Å: Chain B: P.102, W.119, L.164, F.168, L.171, C.172, I.198, I.199, Q.206, I.316, Y.326, F.343, Y.398, Y.435 Ligands: FAD.3 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:L.171, B:I.199, B:I.199, B:I.316, B:Y.326, B:F.343, B:Y.398 Hydrogen bonds: B:Q.206 Water bridges: B:Q.206 Halogen bonds: B:L.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Binda, C. et al., Structures of human monoamine oxidase B complexes with selective noncovalent inhibitors: safinamide and coumarin analogs. J.Med.Chem. (2007)

Release Date

2007-10-16

Peptides

Amine oxidase [flavin-containing] B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Amine oxidase [flavin-containing] B

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