SMTL ID : 1t8k.1

Crystal Structure of apo acyl carrier protein from E. coli

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

10 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: E.21 Ligands: IMD.11 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.21, A:E.21 ZN.2: 3 residues within 4Å: Chain A: E.58, H.75 Ligands: IMD.14 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.58, A:E.58, A:H.75 ZN.3: 1 residues within 4Å: Chain A: E.5 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.5, A:E.5, H2O.2 ZN.4: 3 residues within 4Å: Chain A: K.9, E.13 Ligands: IMD.12 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.13, A:E.13, H2O.3 ZN.5: 2 residues within 4Å: Chain A: E.48 Ligands: IMD.13 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.48, H2O.4 ZN.6: 4 residues within 4Å: Chain A: D.56, E.60 Ligands: ZN.7, IMD.16 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.56, A:E.60, H2O.1, H2O.2, H2O.3 ZN.7: 4 residues within 4Å: Chain A: D.56 Ligands: ZN.6, IMD.15, IMD.16 No protein-ligand interaction detected (PLIP) ZN.8: 1 residues within 4Å: Chain A: E.30 No protein-ligand interaction detected (PLIP) ZN.9: 1 residues within 4Å: Chain A: E.41 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.41, A:E.41, H2O.3, H2O.4 ZN.10: 1 residues within 4Å: Chain A: E.20 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.20, H2O.3, H2O.3

6 x IMD: IMIDAZOLE(Non-covalent)(Non-functional Binders)

IMD.11: 6 residues within 4Å: Chain A: V.17, E.21, D.31, L.32, G.33 Ligands: ZN.1 No protein-ligand interaction detected (PLIP) IMD.12: 6 residues within 4Å: Chain A: R.6, K.9, I.10, E.13, E.49 Ligands: ZN.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.49 IMD.13: 5 residues within 4Å: Chain A: E.47, E.48, T.52, E.53 Ligands: ZN.5 No protein-ligand interaction detected (PLIP) IMD.14: 5 residues within 4Å: Chain A: P.55, E.58, Y.71, H.75 Ligands: ZN.2 No protein-ligand interaction detected (PLIP) IMD.15: 6 residues within 4Å: Chain A: V.43, M.44, E.47, I.54 Ligands: ZN.7, IMD.16 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.47 Water bridges: A:E.53 IMD.16: 3 residues within 4Å: Ligands: ZN.6, ZN.7, IMD.15 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qiu, X. et al., Structure of apo acyl carrier protein and a proposal to engineer protein crystallization through metal ions. Acta Crystallogr.,Sect.D (2004)

Release Date

2004-09-07

Peptides

Acyl carrier protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Acyl carrier protein

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