SMTL ID : 2fae.5 (10 other biounits)

Crystal structure of E. coli decanoyl-ACP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-tetramer

Ligands

16 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: E.5 Chain B: E.48 4 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:E.48, A:E.5, A:E.5, H2O.7 ZN.2: 1 residues within 4Å: Chain A: D.56 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.56, H2O.1, H2O.1, H2O.1, H2O.1 ZN.3: 1 residues within 4Å: Chain A: E.21 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.21, A:E.21, H2O.1, H2O.1 ZN.4: 2 residues within 4Å: Chain A: S.27, D.31 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.31, H2O.1, H2O.2, H2O.2 ZN.5: 1 residues within 4Å: Chain A: D.35 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.35, A:D.35, H2O.5, H2O.5 ZN.6: 3 residues within 4Å: Chain A: A.77 Chain C: A.77 Ligands: ZN.16 No protein-ligand interaction detected (PLIP) ZN.7: 3 residues within 4Å: Chain A: S.1 Chain B: D.51 Chain D: A.77 5 PLIP interactions: 1 interactions with chain D, 1 interactions with chain A, 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: D:A.77, A:S.1, B:D.51, B:D.51, H2O.6 ZN.9: 1 residues within 4Å: Chain B: E.5 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.5, B:E.5 ZN.11: 2 residues within 4Å: Chain C: E.5 Chain D: E.48 4 PLIP interactions: 1 interactions with chain D, 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: D:E.48, C:E.5, C:E.5, H2O.16 ZN.12: 1 residues within 4Å: Chain C: D.56 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:D.56, H2O.10, H2O.10, H2O.10, H2O.10 ZN.13: 1 residues within 4Å: Chain C: E.21 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.21, C:E.21, H2O.10, H2O.10 ZN.14: 2 residues within 4Å: Chain C: S.27, D.31 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:D.31, H2O.11, H2O.11, H2O.11 ZN.15: 1 residues within 4Å: Chain C: D.35 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.35, C:D.35, H2O.14, H2O.14 ZN.16: 3 residues within 4Å: Chain A: A.77 Chain C: A.77 Ligands: ZN.6 No protein-ligand interaction detected (PLIP) ZN.17: 3 residues within 4Å: Chain B: A.77 Chain C: S.1 Chain D: D.51 5 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 2 interactions with chain D, 1 Ligand-Water interactions Metal complexes: C:S.1, B:A.77, D:D.51, D:D.51, H2O.15 ZN.19: 1 residues within 4Å: Chain D: E.5 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:E.5, D:E.5

2 x PM8: S-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATE(Covalent)

PM8.8: 12 residues within 4Å: Chain A: F.28, V.29, S.36, T.39, L.42, L.46, T.52, A.59, E.60, I.62, A.68, Y.71 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.28, A:L.42, A:L.46, A:T.52, A:A.68, A:Y.71 Hydrogen bonds: A:E.60 Water bridges: A:D.35 PM8.18: 12 residues within 4Å: Chain C: F.28, V.29, S.36, T.39, L.42, L.46, T.52, A.59, E.60, I.62, A.68, Y.71 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:F.28, C:L.42, C:L.46, C:T.52, C:A.68, C:Y.71 Hydrogen bonds: C:E.60 Water bridges: C:D.35

2 x PSE: O-PHOSPHOETHANOLAMINE(Covalent)

PSE.10: 1 residues within 4Å: Chain B: S.36 No protein-ligand interaction detected (PLIP) PSE.20: 1 residues within 4Å: Chain D: S.36 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roujeinikova, A. et al., Structural Studies of Fatty Acyl-(Acyl Carrier Protein) Thioesters Reveal a Hydrophobic Binding Cavity that Can Expand to Fit Longer Substrates. J.Mol.Biol. (2007)

Release Date

2006-09-26

Peptides

Acyl carrier protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Acyl carrier protein

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