SMTL ID : 8sms.1

Crosslinked Crystal Structure of Type II Fatty Acid Synthase, FabB, and cerulenin crosslinker-crypto Acyl Carrier Protein, AcpP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

hetero-2-2-mer

Ligands

2 x G7U: N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-N-{2-[(2R)-2-hydroxy-4-oxododecanamido]ethyl}-beta-alaninamide(Covalent)

G7U.1: 23 residues within 4Å: Chain A: Q.114, A.138, M.139 Chain B: G.107, G.108, A.163, C.164, M.198, F.202, V.271, A.272, P.273, H.299, T.301, T.303, V.305, G.306, H.334, F.391, G.392, F.393 Chain C: S.36, L.37 10 PLIP interactions: 8 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: B:F.202, B:V.271, B:F.393, A:M.139 Hydrogen bonds: B:C.164, B:V.271, B:T.301, B:T.303, B:F.393, C:S.36 G7U.2: 22 residues within 4Å: Chain A: G.107, G.108, A.163, C.164, M.198, E.201, F.202, V.271, H.299, T.301, T.303, V.305, G.306, H.334, F.391, G.392, F.393 Chain B: V.135, A.138, M.139 Chain D: S.36, L.37 12 PLIP interactions: 8 interactions with chain A, 1 interactions with chain D, 3 interactions with chain B Hydrophobic interactions: A:A.163, A:F.202, A:F.393, B:V.135, B:A.138, B:M.139 Hydrogen bonds: A:C.164, A:V.271, A:V.271, A:F.393 Water bridges: A:T.301, D:L.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, Z. et al., Masked cerulenin enables a dual-site selective protein crosslink. Chem Sci (2023)

Release Date

2023-09-27

Peptides

3-oxoacyl-[acyl-carrier-protein] synthase 1: AB
Acyl carrier protein: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

3-oxoacyl-[acyl-carrier-protein] synthase 1

Acyl carrier protein

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