SMTL ID : 2fac.3 (8 other biounits)

Crystal structure of E. coli hexanoyl-ACP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-tetramer

Ligands

22 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: S.1 Chain B: D.51 Chain D: A.77 5 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B, 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: A:S.1, B:D.51, B:D.51, D:A.77, H2O.5 ZN.2: 1 residues within 4Å: Chain A: E.21 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.21, A:E.21, H2O.1 ZN.3: 1 residues within 4Å: Chain A: D.31 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.31, H2O.1, H2O.1, H2O.3, H2O.4 ZN.4: 1 residues within 4Å: Chain A: D.35 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.35, A:D.35, H2O.2, H2O.3 ZN.5: 1 residues within 4Å: Chain A: D.56 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.56, H2O.1, H2O.1, H2O.4 ZN.6: 2 residues within 4Å: Chain A: E.47, E.53 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.53, A:E.53 ZN.7: 3 residues within 4Å: Chain A: A.77 Chain C: A.77 Ligands: ZN.20 No protein-ligand interaction detected (PLIP) ZN.9: 2 residues within 4Å: Chain A: E.48 Chain B: E.5 4 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:E.48, B:E.5, B:E.5, H2O.2 ZN.10: 1 residues within 4Å: Chain B: D.56 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.56, H2O.7, H2O.7, H2O.8, H2O.8 ZN.11: 2 residues within 4Å: Chain B: E.48, D.51 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.51, H2O.6, H2O.6, H2O.6, H2O.8 ZN.12: 1 residues within 4Å: Chain B: E.30 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.30, B:E.30 ZN.14: 3 residues within 4Å: Chain B: A.77 Chain C: S.1 Chain D: D.51 5 PLIP interactions: 1 interactions with chain B, 2 interactions with chain D, 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: B:A.77, D:D.51, D:D.51, C:S.1, H2O.13 ZN.15: 1 residues within 4Å: Chain C: E.21 3 PLIP interactions: 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.21, C:E.21, H2O.10 ZN.16: 1 residues within 4Å: Chain C: D.31 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:D.31, H2O.10, H2O.10, H2O.12, H2O.13 ZN.17: 1 residues within 4Å: Chain C: D.35 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.35, C:D.35, H2O.11, H2O.11 ZN.18: 1 residues within 4Å: Chain C: D.56 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:D.56, H2O.10, H2O.10, H2O.12 ZN.19: 2 residues within 4Å: Chain C: E.47, E.53 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:E.53, C:E.53 ZN.20: 3 residues within 4Å: Chain A: A.77 Chain C: A.77 Ligands: ZN.7 No protein-ligand interaction detected (PLIP) ZN.22: 2 residues within 4Å: Chain C: E.48 Chain D: E.5 4 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: D:E.5, D:E.5, C:E.48, H2O.11 ZN.23: 1 residues within 4Å: Chain D: D.56 5 PLIP interactions: 1 interactions with chain D, 4 Ligand-Water interactions Metal complexes: D:D.56, H2O.15, H2O.15, H2O.16, H2O.16 ZN.24: 2 residues within 4Å: Chain D: E.48, D.51 5 PLIP interactions: 1 interactions with chain D, 4 Ligand-Water interactions Metal complexes: D:D.51, H2O.15, H2O.15, H2O.15, H2O.17 ZN.25: 1 residues within 4Å: Chain D: E.30 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:E.30, D:E.30

4 x PM4: S-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) HEXANETHIOATE(Covalent)

PM4.8: 15 residues within 4Å: Chain A: F.28, V.29, D.35, S.36, T.39, L.42, V.43, L.46, E.47, I.54, A.59, E.60, I.62, Y.71, I.72 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.29, A:L.46, A:I.54, A:I.62, A:Y.71, A:I.72 Hydrogen bonds: A:D.35, A:T.39, A:I.62 PM4.13: 14 residues within 4Å: Chain B: F.28, V.29, S.36, T.39, V.43, L.46, E.47, T.52, I.54, A.59, E.60, I.62, Y.71, I.72 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:V.29, B:L.46, B:L.46, B:E.47, B:T.52, B:I.54, B:I.54, B:I.62, B:Y.71, B:I.72 Hydrogen bonds: B:T.39, B:A.59 Water bridges: B:V.29, B:A.34, B:D.35 PM4.21: 15 residues within 4Å: Chain C: F.28, V.29, D.35, S.36, T.39, L.42, V.43, L.46, E.47, I.54, A.59, E.60, I.62, Y.71, I.72 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:V.29, C:L.46, C:I.54, C:I.62, C:Y.71, C:I.72 Hydrogen bonds: C:D.35, C:T.39, C:I.62 PM4.26: 14 residues within 4Å: Chain D: F.28, V.29, S.36, T.39, V.43, L.46, E.47, T.52, I.54, A.59, E.60, I.62, Y.71, I.72 15 PLIP interactions: 15 interactions with chain D Hydrophobic interactions: D:V.29, D:L.46, D:L.46, D:E.47, D:T.52, D:I.54, D:I.54, D:I.62, D:Y.71, D:I.72 Hydrogen bonds: D:T.39, D:A.59 Water bridges: D:V.29, D:A.34, D:D.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roujeinikova, A. et al., Structural Studies of Fatty Acyl-(Acyl Carrier Protein) Thioesters Reveal a Hydrophobic Binding Cavity that Can Expand to Fit Longer Substrates. J.Mol.Biol. (2007)

Release Date

2006-09-26

Peptides

Acyl carrier protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Acyl carrier protein

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