SMTL ID : 1tb6.1

2.5A Crystal Structure of the Antithrombin-Thrombin-Heparin Ternary Complex

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.50 Å
Oligo State
hetero-1-1-1-mer
Ligands
1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
1 x GU3- GU2- GU6- GU1- GU5- GU8- GU9- GU8- GU9- GU8- GU9- GU8- GU5- GU0- GU6- GU4: 2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose-(1-4)-2,3,6-tri-O-sulfo-alpha-D-glucopyranose-(1-4)-2,3,6-tri-O-sulfonato-beta-D-glucopyranose-(1-4)-2,3-di-O-methyl-6-O-sulfonato-alpha-D-glucopyranose-(1-4)-2,3,6-tri-O-methyl-beta-D-glucopyranose-(1-4)-2,3,6-tri-O-methyl-alpha-D-glucopyranose-(1-4)-2,3,6-tri-O-methyl-beta-D-glucopyranose-(1-4)-2,3,6-tri-O-methyl-alpha-D-glucopyranose-(1-4)-2,3,6-tri-O-methyl-beta-D-glucopyranose-(1-4)-2,3,6-tri-O-methyl-alpha-D-glucopyranose-(1-4)-2,3,6-tri-O-methyl-beta-D-glucopyranose-(1-4)-2,3-di-O-methyl-6-O-sulfonato-alpha-D-glucopyranose-(1-4)-2,3-di-O-methyl-beta-D-glucopyranuronic acid-(1-4)-2,3,6-tri-O-sulfo-alpha-D-glucopyranose-(1-4)-2,3-di-O-methyl-alpha-L-idopyranuronic acid-(1-4)-methyl 3-O-methyl-2,6-di-O-sulfo-alpha-D-glucopyranoside(Non-functional Binders)
1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)
1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)
8 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)(Post Translational Modification)
1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Li, W. et al., Structure of the antithrombin-thrombin-heparin ternary complex reveals the antithrombotic mechanism of heparin. Nat.Struct.Mol.Biol. (2004)
Release Date
2004-08-17
Peptides
thrombin: A
thrombin: B
Antithrombin-III: C
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
L
B
H
C
I

thrombin

thrombin

Antithrombin-III

Related Entries With Identical Sequence

1jou.1 | 1jou.2 | 1jou.3 | 1t1f.1 | 1t1f.2 | 1t1f.3 | 2b5t.1 | 2b5t.2 | 2beh.1 | 3b9f.1 | 3gis.1 | 3gis.2 | 3gis.3 | 3lu9.1 | 3lu9.2 | 4dt7.1 | 4dt7.2 | 4dy7.1 | 4dy7.2 | 4hfp.1 | 4hfp.2 | 6px5.1