SMTL ID : 1v7u.1

Crystal structure of Undecaprenyl Pyrophosphate Synthase with farnesyl pyrophosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

3 x FPP: FARNESYL DIPHOSPHATE(Non-covalent)

FPP.1: 17 residues within 4Å: Chain A: M.25, D.26, G.27, N.28, G.29, R.30, R.39, H.43, G.46, A.47, V.50, A.69, E.81, L.85, L.88, F.89, W.221 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:A.69, A:L.85 Hydrogen bonds: A:D.26, A:G.27, A:G.27, A:N.28, A:N.28, A:G.29, A:R.30 Water bridges: A:R.30 Salt bridges: A:R.30, A:R.39, A:R.39 FPP.2: 11 residues within 4Å: Chain A: R.51, V.54, S.55, F.89, A.92, L.93, E.96, S.99, L.100, H.103, I.141 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:R.51, A:V.54, A:F.89, A:A.92, A:E.96, A:E.96, A:L.100, A:I.141 Water bridges: A:S.55 Salt bridges: A:H.103, A:H.103 FPP.3: 7 residues within 4Å: Chain B: V.50, R.51, F.89, A.92, L.93, E.96, I.141 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:V.50, B:R.51, B:F.89, B:A.92, B:E.96, B:I.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, S.-Y. et al., Substrate binding mode and reaction mechanism of undecaprenyl pyrophosphate synthase deduced from crystallographic studies. Protein Sci. (2004)

Release Date

2004-01-13

Peptides

Undecaprenyl pyrophosphate synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Undecaprenyl pyrophosphate synthetase

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