- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.50 Å
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 117 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 2 x K: POTASSIUM ION(Non-functional Binders)(Non-covalent)
- 86 x NA: SODIUM ION(Non-functional Binders)
NA.64: 3 residues within 4Å:- Chain A: C.1068, G.1071, G.1086
Ligand excluded by PLIPNA.65: 5 residues within 4Å:- Chain A: G.1118, U.1119, G.1120, U.1121
- Ligands: MG.24
Ligand excluded by PLIPNA.66: 3 residues within 4Å:- Chain A: A.642, C.1352, G.1353
Ligand excluded by PLIPNA.67: 4 residues within 4Å:- Chain A: A.629, A.630, G.2069, A.2073
Ligand excluded by PLIPNA.68: 4 residues within 4Å:- Chain A: G.2091, G.2092, G.2093, A.2648
Ligand excluded by PLIPNA.69: 4 residues within 4Å:- Chain A: C.39, G.40, A.441, C.442
Ligand excluded by PLIPNA.70: 4 residues within 4Å:- Chain A: C.1393, U.1431, G.1432, U.1723
Ligand excluded by PLIPNA.71: 3 residues within 4Å:- Chain A: A.2576, G.2577, G.2578
Ligand excluded by PLIPNA.72: 3 residues within 4Å:- Chain A: U.2522, G.2523, G.2524
Ligand excluded by PLIPNA.73: 2 residues within 4Å:- Chain A: G.2398, G.2399
Ligand excluded by PLIPNA.74: 5 residues within 4Å:- Chain A: U.2540, U.2606, C.2607, U.2609
- Chain G: W.242
Ligand excluded by PLIPNA.75: 5 residues within 4Å:- Chain A: G.163, A.164, A.165, A.166
- Ligands: MG.139
Ligand excluded by PLIPNA.76: 2 residues within 4Å:- Chain A: C.895, A.896
Ligand excluded by PLIPNA.77: 5 residues within 4Å:- Chain A: G.1415, G.1416
- Chain B: W.41, R.42, N.44
Ligand excluded by PLIPNA.78: 3 residues within 4Å:- Chain A: G.2542, G.2543
- Ligands: NA.80
Ligand excluded by PLIPNA.79: 3 residues within 4Å:- Chain A: A.2464, G.2465
- Chain P: D.36
Ligand excluded by PLIPNA.80: 6 residues within 4Å:- Chain A: C.2541, G.2542, G.2543, G.2610, U.2614
- Ligands: NA.78
Ligand excluded by PLIPNA.81: 5 residues within 4Å:- Chain A: G.835, U.836, A.1735, A.1736
- Chain G: R.229
Ligand excluded by PLIPNA.82: 5 residues within 4Å:- Chain A: G.884, A.2111, G.2112, C.2474, C.2475
Ligand excluded by PLIPNA.83: 4 residues within 4Å:- Chain A: A.44, C.129, U.145, G.146
Ligand excluded by PLIPNA.84: 4 residues within 4Å:- Chain A: A.775, U.776, U.778
- Ligands: MG.30
Ligand excluded by PLIPNA.85: 4 residues within 4Å:- Chain A: G.1970, G.2008, A.2009, U.2011
Ligand excluded by PLIPNA.86: 5 residues within 4Å:- Chain A: U.820, C.852, G.853, U.1830, G.1831
Ligand excluded by PLIPNA.87: 5 residues within 4Å:- Chain A: G.55, A.58, A.59, G.60, C.61
Ligand excluded by PLIPNA.88: 2 residues within 4Å:- Chain A: G.65, U.107
Ligand excluded by PLIPNA.89: 3 residues within 4Å:- Chain A: G.139, C.140, G.141
Ligand excluded by PLIPNA.90: 5 residues within 4Å:- Chain A: U.169, C.170, C.217, G.218, G.220
Ligand excluded by PLIPNA.91: 5 residues within 4Å:- Chain A: G.385, G.386, G.387, C.400, U.401
Ligand excluded by PLIPNA.92: 6 residues within 4Å:- Chain A: C.1893, G.1895, U.1896, G.1897, U.1938
- Ligands: NA.93
Ligand excluded by PLIPNA.93: 5 residues within 4Å:- Chain A: C.1893, A.1894, G.1895, U.1896
- Ligands: NA.92
Ligand excluded by PLIPNA.94: 5 residues within 4Å:- Chain 2: L.150
- Chain A: G.621, U.622, A.627, A.629
Ligand excluded by PLIPNA.95: 2 residues within 4Å:- Chain A: G.1705, G.1706
Ligand excluded by PLIPNA.96: 5 residues within 4Å:- Chain A: G.2539, G.2610, G.2615, U.2644
- Ligands: MG.148
Ligand excluded by PLIPNA.97: 2 residues within 4Å:- Chain A: U.1739, U.1740
Ligand excluded by PLIPNA.98: 3 residues within 4Å:- Chain A: G.680, A.681, G.682
Ligand excluded by PLIPNA.99: 3 residues within 4Å:- Chain A: G.890, G.891, C.892
Ligand excluded by PLIPNA.100: 5 residues within 4Å:- Chain A: U.2662, A.2810, A.2811, A.2815, G.2816
Ligand excluded by PLIPNA.101: 5 residues within 4Å:- Chain A: A.913, C.914, C.1042, C.1043, G.1044
Ligand excluded by PLIPNA.102: 5 residues within 4Å:- Chain A: U.622, U.623, C.632, G.900, G.2536
Ligand excluded by PLIPNA.103: 2 residues within 4Å:- Chain A: A.954
- Chain E: U.82
Ligand excluded by PLIPNA.104: 5 residues within 4Å:- Chain A: A.1039, G.1294, A.1295
- Chain P: G.14, R.21
Ligand excluded by PLIPNA.105: 3 residues within 4Å:- Chain A: U.767, G.2110, A.2111
Ligand excluded by PLIPNA.106: 4 residues within 4Å:- Chain A: G.1118, C.1242
- Chain N: I.46, T.47
Ligand excluded by PLIPNA.107: 5 residues within 4Å:- Chain A: C.919, U.2277, G.2278, A.2462, A.2466
Ligand excluded by PLIPNA.108: 5 residues within 4Å:- Chain A: G.940, U.941, C.1022, G.1023, C.1024
Ligand excluded by PLIPNA.109: 4 residues within 4Å:- Chain A: G.2093, G.2610
- Chain G: W.242
- Ligands: MG.9
Ligand excluded by PLIPNA.110: 4 residues within 4Å:- Chain A: G.897, A.921, A.922, G.923
Ligand excluded by PLIPNA.111: 4 residues within 4Å:- Chain A: A.452, U.453, C.477, G.478
Ligand excluded by PLIPNA.112: 4 residues within 4Å:- Chain A: A.166, C.167, G.2109, G.2110
Ligand excluded by PLIPNA.113: 3 residues within 4Å:- Chain A: G.635, U.2056, G.2057
Ligand excluded by PLIPNA.114: 6 residues within 4Å:- Chain A: U.390, U.391, U.397, C.398
- Chain Q: K.193, A.194
Ligand excluded by PLIPNA.115: 5 residues within 4Å:- Chain A: G.543, G.544, G.609, U.610, U.611
Ligand excluded by PLIPNA.116: 3 residues within 4Å:- Chain A: G.463, G.474
- Chain H: R.55
Ligand excluded by PLIPNA.117: 5 residues within 4Å:- Chain A: A.796, G.797, C.798, G.813, U.814
Ligand excluded by PLIPNA.118: 5 residues within 4Å:- Chain A: U.390, U.391, A.394, U.397
- Chain C: R.42
Ligand excluded by PLIPNA.119: 2 residues within 4Å:- Chain A: G.1831, A.2021
Ligand excluded by PLIPNA.127: 3 residues within 4Å:- Chain A: U.836
- Chain G: Q.230, W.232
Ligand excluded by PLIPNA.128: 6 residues within 4Å:- Chain A: A.1132, G.1133
- Chain M: K.150, V.153, T.154, P.155
Ligand excluded by PLIPNA.129: 3 residues within 4Å:- Chain A: C.2286
- Chain M: D.109, R.112
Ligand excluded by PLIPNA.130: 6 residues within 4Å:- Chain A: U.2658, G.2659
- Chain V: S.70, V.72, W.75
- Ligands: NA.222
Ligand excluded by PLIPNA.175: 1 residues within 4Å:- Chain A: C.1359
Ligand excluded by PLIPNA.176: 4 residues within 4Å:- Chain A: G.2490, U.2491, G.2528, C.2529
Ligand excluded by PLIPNA.177: 3 residues within 4Å:- Chain A: U.918, A.921, G.923
Ligand excluded by PLIPNA.178: 5 residues within 4Å:- Chain A: G.1575, U.1576, G.1617, G.1618, C.1619
Ligand excluded by PLIPNA.179: 4 residues within 4Å:- Chain A: C.194, G.195, A.414, G.415
Ligand excluded by PLIPNA.180: 5 residues within 4Å:- Chain A: G.867, G.868, A.885, G.886
- Chain Q: K.79
Ligand excluded by PLIPNA.181: 6 residues within 4Å:- Chain A: A.631, C.632, U.2534, C.2535, A.2537, U.2538
Ligand excluded by PLIPNA.182: 2 residues within 4Å:- Chain A: U.1292, G.1294
Ligand excluded by PLIPNA.183: 5 residues within 4Å:- Chain A: C.761, G.901, U.902
- Chain P: H.18, R.21
Ligand excluded by PLIPNA.184: 5 residues within 4Å:- Chain A: U.830, U.831, G.832, C.848, U.849
Ligand excluded by PLIPNA.185: 4 residues within 4Å:- Chain A: G.2584, U.2585, U.2586, G.2591
Ligand excluded by PLIPNA.186: 3 residues within 4Å:- Chain A: G.2771, G.2772, A.2798
Ligand excluded by PLIPNA.187: 1 residues within 4Å:- Chain A: C.196
Ligand excluded by PLIPNA.188: 3 residues within 4Å:- Chain A: G.1076, A.1078, C.1079
Ligand excluded by PLIPNA.193: 1 residues within 4Å:- Chain E: C.40
Ligand excluded by PLIPNA.195: 5 residues within 4Å:- Chain E: G.21, U.55, A.57, G.58, C.59
Ligand excluded by PLIPNA.198: 5 residues within 4Å:- Chain A: A.2632
- Chain F: F.201, G.202, G.203, H.208
Ligand excluded by PLIPNA.205: 3 residues within 4Å:- Chain H: D.45, T.94, K.96
Ligand excluded by PLIPNA.206: 5 residues within 4Å:- Chain A: A.2676
- Chain N: R.60, V.61, I.63, Y.69
Ligand excluded by PLIPNA.213: 6 residues within 4Å:- Chain P: R.27, G.28, G.29, G.31, A.33, E.39
Ligand excluded by PLIPNA.215: 5 residues within 4Å:- Chain Q: N.106, F.109, P.110, N.111, L.112
Ligand excluded by PLIPNA.220: 6 residues within 4Å:- Chain U: D.20, R.21, G.22, T.23, S.24, S.46
Ligand excluded by PLIPNA.222: 5 residues within 4Å:- Chain V: S.70, K.71, V.72, D.73
- Ligands: NA.130
Ligand excluded by PLIPNA.224: 3 residues within 4Å:- Chain A: U.11
- Chain V: Q.61, N.63
Ligand excluded by PLIPNA.225: 2 residues within 4Å:- Chain W: H.7, E.61
Ligand excluded by PLIPNA.226: 7 residues within 4Å:- Chain A: U.307, G.333, U.334, A.338, C.341
- Chain X: S.94, N.95
Ligand excluded by PLIP- 22 x CL: CHLORIDE ION(Non-functional Binders)
CL.120: 2 residues within 4Å:- Chain A: G.1451, G.1675
Ligand excluded by PLIPCL.121: 3 residues within 4Å:- Chain A: C.196, G.200, G.228
Ligand excluded by PLIPCL.122: 2 residues within 4Å:- Chain A: G.1299, A.1328
Ligand excluded by PLIPCL.123: 2 residues within 4Å:- Chain A: A.1597, G.1646
Ligand excluded by PLIPCL.124: 4 residues within 4Å:- Chain A: G.1118, C.1242
- Chain N: Q.52, K.56
Ligand excluded by PLIPCL.125: 4 residues within 4Å:- Chain 2: R.115, R.122
- Chain A: C.593, U.594
Ligand excluded by PLIPCL.126: 3 residues within 4Å:- Chain A: G.1071, G.1086, A.1290
Ligand excluded by PLIPCL.190: 3 residues within 4Å:- Chain C: K.24, D.66, L.88
Ligand excluded by PLIPCL.200: 1 residues within 4Å:- Chain F: K.178
Ligand excluded by PLIPCL.204: 4 residues within 4Å:- Chain A: U.2544
- Chain G: R.223, K.224, H.227
Ligand excluded by PLIPCL.207: 4 residues within 4Å:- Chain J: P.36
- Chain N: N.126, I.127, K.128
Ligand excluded by PLIPCL.208: 3 residues within 4Å:- Chain N: P.88, H.89, K.90
Ligand excluded by PLIPCL.209: 4 residues within 4Å:- Chain N: G.64, N.65, G.68, Y.69
Ligand excluded by PLIPCL.211: 6 residues within 4Å:- Chain A: G.2581, A.2595
- Chain O: K.14, I.32, S.33, P.45
Ligand excluded by PLIPCL.212: 4 residues within 4Å:- Chain A: G.643
- Chain P: K.4, Q.7, H.13
Ligand excluded by PLIPCL.214: 2 residues within 4Å:- Chain A: A.692
- Chain P: R.53
Ligand excluded by PLIPCL.216: 6 residues within 4Å:- Chain Q: N.106, R.113, V.114, L.157, R.158, T.159
Ligand excluded by PLIPCL.217: 4 residues within 4Å:- Chain I: K.146
- Chain R: R.37, K.38, N.107
Ligand excluded by PLIPCL.219: 5 residues within 4Å:- Chain A: G.744
- Chain S: E.42, V.43, N.44, R.47
Ligand excluded by PLIPCL.221: 4 residues within 4Å:- Chain A: C.2387
- Chain U: F.52, H.53, F.56
Ligand excluded by PLIPCL.223: 2 residues within 4Å:- Chain V: K.26, K.118
Ligand excluded by PLIPCL.229: 2 residues within 4Å:- Chain 2: R.169
- Chain A: A.1327
Ligand excluded by PLIP- 5 x CD: CADMIUM ION(Non-covalent)
CD.189: 5 residues within 4Å:- Chain C: C.11, H.13, C.14, C.71, C.74
No protein-ligand interaction detected (PLIP)CD.218: 1 residues within 4Å:- Chain S: H.40
2 PLIP interactions:1 interactions with chain S, 1 Ligand-Water interactions- Metal complexes: S:H.40, H2O.280
CD.228: 4 residues within 4Å:- Chain Y: C.6, C.9, C.32, C.36
No protein-ligand interaction detected (PLIP)CD.231: 4 residues within 4Å:- Chain 3: C.30, C.33, C.48, C.51
No protein-ligand interaction detected (PLIP)CD.232: 4 residues within 4Å:- Chain 4: C.19, C.22, C.34, C.37
4 PLIP interactions:4 interactions with chain 4- Metal complexes: 4:C.19, 4:C.22, 4:C.34, 4:C.37
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ferbitz, L. et al., Trigger Factor in Complex with the Ribosome Forms a Molecular Cradle for Nascent Proteins. Nature (2004)
- Release Date
- 2004-09-02
- Peptides
- 50S RIBOSOMAL PROTEIN L39E: B
50S RIBOSOMAL PROTEIN L44E LA, HLA, RIBOSOMAL PROTEIN L44E: C
TRIGGER FACTOR: D
50S RIBOSOMAL PROTEIN L2P: F
50S RIBOSOMAL PROTEIN L3P: G
50S RIBOSOMAL PROTEIN L4P: H
50S RIBOSOMAL PROTEIN L5P HMAL5, HL13, RIBOSOMAL PROTEIN L5: I
50S RIBOSOMAL PROTEIN L6P: J
50S RIBOSOMAL PROTEIN L7AE: K
50S RIBOSOMAL PROTEIN L10E: L
50S RIBOSOMAL PROTEIN L10E: M
50S RIBOSOMAL PROTEIN L13P: N
50S RIBOSOMAL PROTEIN L14P: O
50S RIBOSOMAL PROTEIN L15P: P
50S RIBOSOMAL PROTEIN L15E: Q
50S RIBOSOMAL PROTEIN L18P: R
50S RIBOSOMAL PROTEIN L18E: S
50S RIBOSOMAL PROTEIN L19E: T
50S RIBOSOMAL PROTEIN L21E: U
50S RIBOSOMAL PROTEIN L22P HMAL22, HL23, RIBOSOMAL PROTEIN L22: V
50S RIBOSOMAL PROTEIN L23P: W
RIBOSOMAL PROTEIN L24: X
50S RIBOSOMAL PROTEIN L24P: Y
50S RIBOSOMAL PROTEIN L24E: Z
50S RIBOSOMAL PROTEIN L30P: 0
50S RIBOSOMAL PROTEIN L31E: 1
50S RIBOSOMAL PROTEIN L32E: 2
50S RIBOSOMAL PROTEIN L37AE: 3
RIBOSOMAL PROTEIN L37E: 4 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:B
1C
2D
5F
AG
BH
CI
DJ
EK
FL
GM
HN
IO
JP
KQ
LR
MS
NT
OU
PV
QW
RX
SY
TZ
U0
V1
W2
X3
Y4
Z
SMTL ID : 1w2b.1
Trigger Factor ribosome binding domain in complex with 50S
50S RIBOSOMAL PROTEIN L39E
50S RIBOSOMAL PROTEIN L44E LA, HLA, RIBOSOMAL PROTEIN L44E
TRIGGER FACTOR
50S RIBOSOMAL PROTEIN L2P
50S RIBOSOMAL PROTEIN L3P
50S RIBOSOMAL PROTEIN L4P
50S RIBOSOMAL PROTEIN L5P HMAL5, HL13, RIBOSOMAL PROTEIN L5
50S RIBOSOMAL PROTEIN L6P
50S RIBOSOMAL PROTEIN L7AE
50S RIBOSOMAL PROTEIN L10E
50S RIBOSOMAL PROTEIN L10E
50S RIBOSOMAL PROTEIN L13P
50S RIBOSOMAL PROTEIN L14P
50S RIBOSOMAL PROTEIN L15P
50S RIBOSOMAL PROTEIN L15E
50S RIBOSOMAL PROTEIN L18P
50S RIBOSOMAL PROTEIN L18E
50S RIBOSOMAL PROTEIN L19E
50S RIBOSOMAL PROTEIN L21E
50S RIBOSOMAL PROTEIN L22P HMAL22, HL23, RIBOSOMAL PROTEIN L22
50S RIBOSOMAL PROTEIN L23P
RIBOSOMAL PROTEIN L24
50S RIBOSOMAL PROTEIN L24P
50S RIBOSOMAL PROTEIN L24E
50S RIBOSOMAL PROTEIN L30P
50S RIBOSOMAL PROTEIN L31E
50S RIBOSOMAL PROTEIN L32E
50S RIBOSOMAL PROTEIN L37AE
RIBOSOMAL PROTEIN L37E
Related Entries With Identical Sequence
1jj2.1 | 1k73.1 | 1k8a.1 | 1k9m.1 | 1kc8.1 | 1kd1.1 | 1kqs.1 | 1m1k.1 | 1m90.1 | 1n8r.1 | 1nji.1 | 1q7y.1 | 1q81.1 | 1q82.1 | 1q86.1 | 1qvf.1 | 1qvg.1 | 1s72.1 | 1vq4.1 | 1vq5.1 | 1vq6.1 | 1vq7.1 | 1vq8.1 | 1vq9.1 | 1vqk.1 | 1vql.1 | 1vqm.1 | 1vqn.1 | 1vqo.1 | 1vqp.1 more...less...1yhq.1 | 1yi2.1 | 1yij.1 | 1yit.1 | 1yj9.1 | 1yjn.1 | 1yjw.1 | 2otj.1 | 2otl.1 | 2qa4.1 | 2qex.1 | 3cc2.1 | 3cc4.1 | 3cc7.1 | 3cce.1 | 3ccj.1 | 3ccl.1 | 3ccm.1 | 3ccq.1 | 3ccr.1 | 3ccs.1 | 3ccu.1 | 3ccv.1 | 3cd6.1 | 3cma.1 | 3cme.1 | 3cpw.1 | 3cxc.1 | 3g4s.1 | 3g6e.1 | 3g71.1 | 3i55.1 | 3i56.1 | 3ow2.1 | 4v4p.1 | 4v4r.1 | 4v4s.1 | 4v4t.1 | 4v9f.1