3cd6.1 | SWISS-MODEL Template Library

SMTL ID : 3cd6.1

Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x C- C- PPU: RNA (5'-R(*CP*CP*(PPU))-3')(Non-functional Binders)

93 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

22 x CL: CHLORIDE ION(Non-functional Binders)

107 x SR: STRONTIUM ION(Non-functional Binders)

75 x NA: SODIUM ION(Non-functional Binders)

5 x CD: CADMIUM ION(Non-covalent)

CD.24:	1 residues within 4Å: Chain O: H.41 3 PLIP interactions: 1 interactions with chain O, 2 Ligand-Water interactions Metal complexes: O:H.41, H₂O.184, H₂O.193
CD.33:	4 residues within 4Å: Chain U: C.7, C.10, C.33, C.37 4 PLIP interactions: 4 interactions with chain U Metal complexes: U:C.7, U:C.10, U:C.33, U:C.37
CD.36:	5 residues within 4Å: Chain Z: N.65, C.66, C.81, Y.83, C.84 1 PLIP interactions: 1 interactions with chain Z Metal complexes: Z:C.84
CD.37:	4 residues within 4Å: Chain 0: C.20, C.23, C.35, C.38 4 PLIP interactions: 4 interactions with chain 0 Metal complexes: 0:C.20, 0:C.23, 0:C.35, 0:C.38
CD.40:	4 residues within 4Å: Chain 2: C.11, C.14, Q.18, C.71 No protein-ligand interaction detected (PLIP)

2 x K: POTASSIUM ION(Non-functional Binders)(Non-covalent)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Blaha, G. et al., Mutations outside the anisomycin-binding site can make ribosomes drug-resistant. J.Mol.Biol. (2008)

Release Date

2008-05-20

Peptides

50S ribosomal protein L2P: A
50S ribosomal protein L3P: B
50S ribosomal protein L4P: C
50S ribosomal protein L5P: D
50S ribosomal protein L6P: E
50S ribosomal protein L7Ae: F
50S ribosomal protein L10E: G
50S ribosomal protein L10e: H
50S ribosomal protein L11P: I
50S ribosomal protein L13P: J
50S ribosomal protein L14P: K
50S ribosomal protein L15P: L
50S ribosomal protein L15e: M
50S ribosomal protein L18P: N
50S ribosomal protein L18e: O
50S ribosomal protein L19e: P
50S ribosomal protein L21e: Q
50S ribosomal protein L22P: R
50S ribosomal protein L23P: S
50S ribosomal protein L24P: T
50S ribosomal protein L24e: U
50S ribosomal protein L29P: V
50S ribosomal protein L30P: W
50S ribosomal protein L31e: X
50S ribosomal protein L32e: Y
50S ribosomal protein L37Ae: Z
50S ribosomal protein L37e: 0
50S ribosomal protein L39e: 1
50S ribosomal protein L44E: 2

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Y
Y

Z
Z

0
1

1
2

2
3

50S ribosomal protein L2P

50S ribosomal protein L3P

50S ribosomal protein L4P

50S ribosomal protein L5P

50S ribosomal protein L6P

50S ribosomal protein L7Ae

50S ribosomal protein L10E

50S ribosomal protein L10e

50S ribosomal protein L11P

50S ribosomal protein L13P

50S ribosomal protein L14P

50S ribosomal protein L15P

50S ribosomal protein L15e

50S ribosomal protein L18P

50S ribosomal protein L18e

50S ribosomal protein L19e

50S ribosomal protein L21e

50S ribosomal protein L22P

50S ribosomal protein L23P

50S ribosomal protein L24P

50S ribosomal protein L24e

50S ribosomal protein L29P

50S ribosomal protein L30P

50S ribosomal protein L31e

50S ribosomal protein L32e

50S ribosomal protein L37Ae

50S ribosomal protein L37e

50S ribosomal protein L39e

50S ribosomal protein L44E

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1jj2.1 | 1k73.1 | 1k8a.1 | 1k9m.1 | 1kc8.1 | 1kd1.1 | 1kqs.1 | 1m1k.1 | 1m90.1 | 1n8r.1 | 1nji.1 | 1q7y.1 | 1q81.1 | 1q82.1 | 1q86.1 | 1qvf.1 | 1qvg.1 | 1s72.1 | 1vq4.1 | 1vq5.1 | 1vq6.1 | 1vq7.1 | 1vq8.1 | 1vq9.1 | 1vqk.1 | 1vql.1 | 1vqm.1 | 1vqn.1 | 1vqo.1 | 1vqp.1 more...