- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.00 Å
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 116 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 2 x K: POTASSIUM ION(Non-functional Binders)(Non-covalent)
- 86 x NA: SODIUM ION(Non-functional Binders)
NA.110: 4 residues within 4Å:- Chain A: C.1067, C.1068, G.1071, G.1086
Ligand excluded by PLIPNA.111: 5 residues within 4Å:- Chain A: G.1118, U.1119, G.1120, U.1121
- Ligands: MG.25
Ligand excluded by PLIPNA.112: 5 residues within 4Å:- Chain A: A.642, G.643, U.903, G.1353
- Chain N: R.9
Ligand excluded by PLIPNA.113: 4 residues within 4Å:- Chain A: A.629, A.630, G.2069, A.2073
Ligand excluded by PLIPNA.114: 4 residues within 4Å:- Chain A: G.2091, G.2092, G.2093, A.2648
Ligand excluded by PLIPNA.115: 4 residues within 4Å:- Chain A: C.39, G.40, A.441, C.442
Ligand excluded by PLIPNA.116: 3 residues within 4Å:- Chain A: C.1393, U.1431, U.1723
Ligand excluded by PLIPNA.117: 3 residues within 4Å:- Chain A: A.2576, G.2577, G.2578
Ligand excluded by PLIPNA.118: 4 residues within 4Å:- Chain A: C.2492, U.2522, G.2523, G.2524
Ligand excluded by PLIPNA.119: 2 residues within 4Å:- Chain A: A.2397, G.2398
Ligand excluded by PLIPNA.120: 4 residues within 4Å:- Chain A: U.2540, U.2606, C.2607
- Chain D: W.243
Ligand excluded by PLIPNA.121: 5 residues within 4Å:- Chain A: G.163, A.164, A.165, A.166
- Ligands: MG.73
Ligand excluded by PLIPNA.122: 2 residues within 4Å:- Chain A: C.895, A.896
Ligand excluded by PLIPNA.123: 5 residues within 4Å:- Chain 3: W.43, N.46, D.47
- Chain A: G.1415, G.1416
Ligand excluded by PLIPNA.124: 3 residues within 4Å:- Chain A: G.2542, G.2543
- Ligands: NA.126
Ligand excluded by PLIPNA.125: 3 residues within 4Å:- Chain A: A.2464, G.2465
- Chain N: D.37
Ligand excluded by PLIPNA.126: 4 residues within 4Å:- Chain A: G.2542, G.2610, U.2614
- Ligands: NA.124
Ligand excluded by PLIPNA.127: 5 residues within 4Å:- Chain A: G.835, U.836, A.1735, A.1736
- Chain D: R.230
Ligand excluded by PLIPNA.128: 2 residues within 4Å:- Chain A: C.2286, G.2287
Ligand excluded by PLIPNA.129: 5 residues within 4Å:- Chain A: G.884, A.885, A.2111, G.2112, C.2474
Ligand excluded by PLIPNA.130: 4 residues within 4Å:- Chain A: C.129, A.144, U.145, G.146
Ligand excluded by PLIPNA.131: 5 residues within 4Å:- Chain A: A.775, U.776, C.777, U.778
- Ligands: MG.31
Ligand excluded by PLIPNA.132: 4 residues within 4Å:- Chain A: G.1970, G.2008, A.2009, U.2011
Ligand excluded by PLIPNA.133: 5 residues within 4Å:- Chain A: U.820, C.852, G.853, U.1830, G.1831
Ligand excluded by PLIPNA.134: 5 residues within 4Å:- Chain A: G.55, A.58, A.59, G.60, C.61
Ligand excluded by PLIPNA.135: 3 residues within 4Å:- Chain A: G.65, U.106, U.107
Ligand excluded by PLIPNA.136: 3 residues within 4Å:- Chain A: G.139, C.140, G.141
Ligand excluded by PLIPNA.137: 4 residues within 4Å:- Chain A: U.169, C.170, C.217, G.220
Ligand excluded by PLIPNA.138: 4 residues within 4Å:- Chain A: G.385, G.386, U.401, C.402
Ligand excluded by PLIPNA.139: 5 residues within 4Å:- Chain A: C.1893, U.1896, G.1897, G.1937, U.1938
Ligand excluded by PLIPNA.140: 4 residues within 4Å:- Chain A: C.1893, A.1894, G.1895, U.1896
Ligand excluded by PLIPNA.141: 5 residues within 4Å:- Chain 0: L.151
- Chain A: C.620, G.621, U.622, A.629
Ligand excluded by PLIPNA.142: 3 residues within 4Å:- Chain A: C.1704, G.1705, G.1706
Ligand excluded by PLIPNA.143: 6 residues within 4Å:- Chain A: U.2658, G.2659
- Chain T: S.71, V.73, D.74
- Ligands: NA.219
Ligand excluded by PLIPNA.144: 5 residues within 4Å:- Chain A: G.2539, G.2610, C.2613, U.2644
- Ligands: MG.82
Ligand excluded by PLIPNA.145: 3 residues within 4Å:- Chain A: U.1739, U.1740, G.2032
Ligand excluded by PLIPNA.146: 4 residues within 4Å:- Chain A: G.680, A.681, G.682
- Ligands: MG.81
Ligand excluded by PLIPNA.147: 2 residues within 4Å:- Chain A: G.891, C.892
Ligand excluded by PLIPNA.148: 7 residues within 4Å:- Chain A: U.307, G.333, U.334, A.338, C.341
- Chain V: S.95, N.96
Ligand excluded by PLIPNA.149: 5 residues within 4Å:- Chain A: U.2662, A.2810, A.2811, A.2815, G.2816
Ligand excluded by PLIPNA.150: 3 residues within 4Å:- Chain A: C.1042, C.1043, G.1044
Ligand excluded by PLIPNA.151: 3 residues within 4Å:- Chain A: U.622, U.623, G.900
Ligand excluded by PLIPNA.152: 4 residues within 4Å:- Chain A: A.1039, G.1294, A.1295
- Chain N: G.15
Ligand excluded by PLIPNA.153: 4 residues within 4Å:- Chain A: U.767, C.768, G.2110, A.2111
Ligand excluded by PLIPNA.154: 5 residues within 4Å:- Chain A: C.1242, U.1243
- Chain L: I.18, I.46, T.47
Ligand excluded by PLIPNA.155: 5 residues within 4Å:- Chain A: C.919, U.2277, G.2278, A.2462, A.2466
Ligand excluded by PLIPNA.156: 5 residues within 4Å:- Chain A: G.940, U.941, C.1022, G.1023, C.1024
Ligand excluded by PLIPNA.157: 5 residues within 4Å:- Chain A: G.2093, U.2609, G.2610, A.2611
- Ligands: MG.9
Ligand excluded by PLIPNA.158: 5 residues within 4Å:- Chain A: G.897, A.921, A.922, G.923, U.2108
Ligand excluded by PLIPNA.159: 2 residues within 4Å:- Chain A: U.453, C.477
Ligand excluded by PLIPNA.160: 3 residues within 4Å:- Chain A: U.836, C.837
- Chain D: Q.231
Ligand excluded by PLIPNA.161: 4 residues within 4Å:- Chain A: A.166, G.2109, G.2110, U.2276
Ligand excluded by PLIPNA.162: 2 residues within 4Å:- Chain A: C.1359
- Chain E: G.66
Ligand excluded by PLIPNA.163: 1 residues within 4Å:- Chain A: G.635
Ligand excluded by PLIPNA.164: 7 residues within 4Å:- Chain A: G.389, U.390, U.391, U.397, C.398
- Chain O: K.194, A.195
Ligand excluded by PLIPNA.165: 6 residues within 4Å:- Chain A: G.542, G.543, G.544, U.610, U.611, C.612
Ligand excluded by PLIPNA.166: 3 residues within 4Å:- Chain A: G.463, G.474
- Chain E: R.55
Ligand excluded by PLIPNA.167: 4 residues within 4Å:- Chain A: G.797, C.798, G.813, U.814
Ligand excluded by PLIPNA.168: 5 residues within 4Å:- Chain 4: R.42
- Chain A: U.390, U.391, A.394, U.397
Ligand excluded by PLIPNA.169: 1 residues within 4Å:- Chain A: G.1831
Ligand excluded by PLIPNA.170: 2 residues within 4Å:- Chain A: U.2527, G.2528
Ligand excluded by PLIPNA.171: 3 residues within 4Å:- Chain A: U.918, G.920, A.921
Ligand excluded by PLIPNA.172: 6 residues within 4Å:- Chain A: G.1575, U.1576, C.1577, G.1617, G.1618, C.1619
Ligand excluded by PLIPNA.173: 3 residues within 4Å:- Chain A: G.195, A.414, G.415
Ligand excluded by PLIPNA.174: 4 residues within 4Å:- Chain A: G.867, G.868, A.885, G.886
Ligand excluded by PLIPNA.175: 6 residues within 4Å:- Chain A: A.631, C.632, A.2095, U.2534, A.2537, U.2538
Ligand excluded by PLIPNA.176: 2 residues within 4Å:- Chain A: U.1292, G.1294
Ligand excluded by PLIPNA.177: 6 residues within 4Å:- Chain A: C.761, G.901, U.902
- Chain N: T.13, H.19, R.22
Ligand excluded by PLIPNA.178: 5 residues within 4Å:- Chain A: U.830, U.831, G.832, C.848, U.849
Ligand excluded by PLIPNA.179: 4 residues within 4Å:- Chain A: G.2584, U.2585, U.2586, G.2591
Ligand excluded by PLIPNA.180: 3 residues within 4Å:- Chain A: G.2771, G.2772, A.2798
Ligand excluded by PLIPNA.181: 2 residues within 4Å:- Chain A: C.196, G.228
Ligand excluded by PLIPNA.182: 2 residues within 4Å:- Chain A: G.1076, A.1078
Ligand excluded by PLIPNA.192: 1 residues within 4Å:- Chain B: C.40
Ligand excluded by PLIPNA.193: 2 residues within 4Å:- Chain A: A.954
- Chain B: U.82
Ligand excluded by PLIPNA.194: 5 residues within 4Å:- Chain B: G.21, A.57, G.58, C.59
- Ligands: MG.191
Ligand excluded by PLIPNA.197: 5 residues within 4Å:- Chain A: A.2632
- Chain C: F.202, G.203, G.204, H.209
Ligand excluded by PLIPNA.201: 4 residues within 4Å:- Chain E: D.45, K.96, D.97, R.98
Ligand excluded by PLIPNA.202: 7 residues within 4Å:- Chain A: A.1132, G.1133, G.2519
- Chain J: Y.154, I.157, T.158, P.159
Ligand excluded by PLIPNA.203: 6 residues within 4Å:- Chain A: A.2676
- Chain L: R.60, V.61, I.63, Y.69, Y.71
Ligand excluded by PLIPNA.209: 5 residues within 4Å:- Chain N: G.29, G.32, D.33, A.34, E.40
Ligand excluded by PLIPNA.212: 5 residues within 4Å:- Chain O: S.107, F.110, P.111, L.113, D.158
Ligand excluded by PLIPNA.217: 6 residues within 4Å:- Chain S: N.17, D.21, G.23, S.25, D.45, S.47
Ligand excluded by PLIPNA.219: 8 residues within 4Å:- Chain A: U.2658, G.2659
- Chain T: K.70, S.71, V.73, W.76, D.77
- Ligands: NA.143
Ligand excluded by PLIPNA.220: 4 residues within 4Å:- Chain A: U.11
- Chain T: K.61, Q.62, N.64
Ligand excluded by PLIPNA.222: 2 residues within 4Å:- Chain U: H.8, E.62
Ligand excluded by PLIP- 22 x CL: CHLORIDE ION(Non-functional Binders)
CL.183: 2 residues within 4Å:- Chain A: G.1451, G.1675
Ligand excluded by PLIPCL.184: 3 residues within 4Å:- Chain A: U.201, G.228, C.229
Ligand excluded by PLIPCL.185: 4 residues within 4Å:- Chain A: G.1298, G.1299, A.1327, A.1328
Ligand excluded by PLIPCL.186: 3 residues within 4Å:- Chain A: G.643
- Chain N: Q.8, H.14
Ligand excluded by PLIPCL.187: 4 residues within 4Å:- Chain A: G.1539, A.1596, A.1597, G.1645
Ligand excluded by PLIPCL.188: 3 residues within 4Å:- Chain A: G.1118, C.1242
- Chain L: K.56
Ligand excluded by PLIPCL.189: 4 residues within 4Å:- Chain 0: R.116, R.123
- Chain A: C.593, U.594
Ligand excluded by PLIPCL.190: 2 residues within 4Å:- Chain A: G.1071, G.1086
Ligand excluded by PLIPCL.198: 2 residues within 4Å:- Chain C: K.176, K.179
Ligand excluded by PLIPCL.200: 4 residues within 4Å:- Chain A: U.2544
- Chain D: R.224, K.225, H.228
Ligand excluded by PLIPCL.204: 4 residues within 4Å:- Chain G: P.37
- Chain L: N.126, I.127, K.128
Ligand excluded by PLIPCL.205: 4 residues within 4Å:- Chain L: P.88, H.89, K.90, K.91
Ligand excluded by PLIPCL.206: 3 residues within 4Å:- Chain L: G.64, N.65, G.68
Ligand excluded by PLIPCL.208: 5 residues within 4Å:- Chain A: G.2581, A.2595
- Chain M: K.14, I.32, S.33
Ligand excluded by PLIPCL.210: 3 residues within 4Å:- Chain A: A.692
- Chain N: K.53, R.54
Ligand excluded by PLIPCL.213: 5 residues within 4Å:- Chain O: S.107, V.115, D.158, R.159, V.160
Ligand excluded by PLIPCL.214: 4 residues within 4Å:- Chain F: K.147
- Chain P: R.38, K.39, N.108
Ligand excluded by PLIPCL.216: 4 residues within 4Å:- Chain A: G.744
- Chain Q: V.44, N.45, R.48
Ligand excluded by PLIPCL.218: 4 residues within 4Å:- Chain A: C.2387
- Chain S: F.53, H.54, F.57
Ligand excluded by PLIPCL.221: 2 residues within 4Å:- Chain T: K.27, K.119
Ligand excluded by PLIPCL.226: 2 residues within 4Å:- Chain 0: R.170
- Chain A: G.1268
Ligand excluded by PLIPCL.231: 2 residues within 4Å:- Chain 4: K.24, D.66
Ligand excluded by PLIP- 5 x CD: CADMIUM ION(Non-covalent)
CD.215: 1 residues within 4Å:- Chain Q: H.41
No protein-ligand interaction detected (PLIP)CD.224: 4 residues within 4Å:- Chain W: C.7, C.10, C.33, C.37
2 PLIP interactions:2 interactions with chain W- Metal complexes: W:C.7, W:C.37
CD.227: 4 residues within 4Å:- Chain 1: C.39, C.42, C.57, C.60
No protein-ligand interaction detected (PLIP)CD.228: 4 residues within 4Å:- Chain 2: C.20, C.23, C.35, C.38
4 PLIP interactions:4 interactions with chain 2- Metal complexes: 2:C.20, 2:C.23, 2:C.35, 2:C.38
CD.230: 5 residues within 4Å:- Chain 4: C.11, H.13, C.14, C.71, C.74
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kavran, J.M. et al., Structure of the base of the L7/L12 stalk of the Haloarcula marismortui large ribosomal subunit: Analysis of L11 movements. J.Mol.Biol. (2007)
- Release Date
- 2008-04-01
- Peptides
- 50S ribosomal protein L2P: C
50S ribosomal protein L3P: D
50S ribosomal protein L4P: E
50S ribosomal protein L5P: F
50S ribosomal protein L6P: G
50S ribosomal protein L7Ae: H
ACIDIC RIBOSOMAL PROTEIN P0 HOMO: I
50S ribosomal protein L10e: J
50S ribosomal protein L11P: K
50S ribosomal protein L13P: L
50S ribosomal protein L14P: M
50S ribosomal protein L15P: N
50S ribosomal protein L15e: O
50S ribosomal protein L18P: P
50S ribosomal protein L18e: Q
50S ribosomal protein L19e: R
50S ribosomal protein L21e: S
50S ribosomal protein L22P: T
50S ribosomal protein L23P: U
50S ribosomal protein L24P: V
50S ribosomal protein L24e: W
50S ribosomal protein L29P: X
50S ribosomal protein L30P: Y
50S RIBOSOMAL PROTEIN L31E: Z
50S ribosomal protein L32e: 0
50S ribosomal protein L37Ae: 1
50S ribosomal protein L37e: 2
50S ribosomal protein L39e: 3
50S ribosomal protein L44E: 4 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:C
AD
BE
CF
DG
EH
FI
GJ
HK
IL
JM
KN
LO
MP
NQ
OR
PS
QT
RU
SV
TW
UX
VY
WZ
X0
Y1
Z2
13
24
3
SMTL ID : 2qa4.1
A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit
50S ribosomal protein L2P
50S ribosomal protein L3P
50S ribosomal protein L4P
50S ribosomal protein L5P
50S ribosomal protein L6P
50S ribosomal protein L7Ae
ACIDIC RIBOSOMAL PROTEIN P0 HOMO
50S ribosomal protein L10e
50S ribosomal protein L11P
50S ribosomal protein L13P
50S ribosomal protein L14P
50S ribosomal protein L15P
50S ribosomal protein L15e
50S ribosomal protein L18P
50S ribosomal protein L18e
50S ribosomal protein L19e
50S ribosomal protein L21e
50S ribosomal protein L22P
50S ribosomal protein L23P
50S ribosomal protein L24P
50S ribosomal protein L24e
50S ribosomal protein L29P
50S ribosomal protein L30P
50S RIBOSOMAL PROTEIN L31E
50S ribosomal protein L32e
50S ribosomal protein L37Ae
50S ribosomal protein L37e
50S ribosomal protein L39e
50S ribosomal protein L44E
Related Entries With Identical Sequence
1jj2.1 | 1k73.1 | 1k8a.1 | 1k9m.1 | 1kc8.1 | 1kd1.1 | 1kqs.1 | 1m1k.1 | 1m90.1 | 1n8r.1 | 1nji.1 | 1q7y.1 | 1q81.1 | 1q82.1 | 1q86.1 | 1qvf.1 | 1qvg.1 | 1s72.1 | 1vq4.1 | 1vq5.1 | 1vq6.1 | 1vq7.1 | 1vq8.1 | 1vq9.1 | 1vqk.1 | 1vql.1 | 1vqm.1 | 1vqn.1 | 1vqo.1 | 1vqp.1 more...less...1w2b.1 | 1yhq.1 | 1yi2.1 | 1yij.1 | 1yit.1 | 1yj9.1 | 1yjn.1 | 1yjw.1 | 2otj.1 | 2otl.1 | 2qex.1 | 3cc2.1 | 3cc4.1 | 3cc7.1 | 3cce.1 | 3ccj.1 | 3ccl.1 | 3ccm.1 | 3ccq.1 | 3ccr.1 | 3ccs.1 | 3ccu.1 | 3ccv.1 | 3cd6.1 | 3cma.1 | 3cme.1 | 3cpw.1 | 3cxc.1 | 3g4s.1 | 3g6e.1 | 3g71.1 | 3i55.1 | 3i56.1 | 3ow2.1 | 4v4p.1 | 4v4r.1 | 4v4s.1 | 4v4t.1 | 4v9f.1