SMTL ID : 2qex.1

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.90 Å
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
116 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
2 x K: POTASSIUM ION(Non-functional Binders)(Non-covalent)
86 x NA: SODIUM ION(Non-functional Binders)
22 x CL: CHLORIDE ION(Non-functional Binders)
1 x NEG: NEGAMYCIN(Non-functional Binders)
5 x CD: CADMIUM ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Schroeder, S.J. et al., Negamycin binds to the wall of the nascent chain exit tunnel of the 50S ribosomal subunit. Antimicrob.Agents Chemother. (2007)
Release Date
2008-09-30
Peptides
50S ribosomal protein L2P: C
50S ribosomal protein L3P: D
50S ribosomal protein L4P: E
50S ribosomal protein L5P: F
50S ribosomal protein L6P: G
50S ribosomal protein L7Ae: H
Acidic ribosomal protein P0 homolog: I
50S ribosomal protein L10e: J
50S ribosomal protein L13P: K
50S ribosomal protein L14P: L
50S ribosomal protein L15P: M
50S ribosomal protein L15e: N
50S ribosomal protein L18P: O
50S ribosomal protein L18e: P
50S ribosomal protein L19e: Q
50S ribosomal protein L21e: R
50S ribosomal protein L22P: S
50S ribosomal protein L23P: T
50S ribosomal protein L24P: U
50S ribosomal protein L24e: V
50S ribosomal protein L29P: W
50S ribosomal protein L30P: X
50S ribosomal protein L31e: Y
50S ribosomal protein L32e: Z
50S ribosomal protein L37Ae: 0
50S ribosomal protein L37e: 1
50S ribosomal protein L39e: 2
50S ribosomal protein L44e: 3
50S ribosomal protein L11P: 4
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
C
A
D
B
E
C
F
D
G
E
H
F
I
G
J
H
K
J
L
K
M
L
N
M
O
N
P
O
Q
P
R
Q
S
R
T
S
U
T
V
U
W
V
X
W
Y
X
Z
Y
0
Z
1
1
2
2
3
3
4
I

50S ribosomal protein L2P

50S ribosomal protein L3P

50S ribosomal protein L4P

50S ribosomal protein L5P

50S ribosomal protein L6P

50S ribosomal protein L7Ae

Acidic ribosomal protein P0 homolog

50S ribosomal protein L10e

50S ribosomal protein L13P

50S ribosomal protein L14P

50S ribosomal protein L15P

50S ribosomal protein L15e

50S ribosomal protein L18P

50S ribosomal protein L18e

50S ribosomal protein L19e

50S ribosomal protein L21e

50S ribosomal protein L22P

50S ribosomal protein L23P

50S ribosomal protein L24P

50S ribosomal protein L24e

50S ribosomal protein L29P

50S ribosomal protein L30P

50S ribosomal protein L31e

50S ribosomal protein L32e

50S ribosomal protein L37Ae

50S ribosomal protein L37e

50S ribosomal protein L39e

50S ribosomal protein L44e

50S ribosomal protein L11P

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