- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- hetero-oligomer
- Ligands
- 61 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 1 x K: POTASSIUM ION(Non-functional Binders)
- 26 x NA: SODIUM ION(Non-functional Binders)
NA.57: 3 residues within 4Å:- Chain A: A.619, A.620, A.2062
Ligand excluded by PLIPNA.58: 4 residues within 4Å:- Chain A: C.31, G.32, A.431, C.432
Ligand excluded by PLIPNA.59: 5 residues within 4Å:- Chain A: C.1382, U.1420, G.1421, U.1712
- Ligands: SR.130
Ligand excluded by PLIPNA.60: 3 residues within 4Å:- Chain A: A.2565, G.2566, G.2567
Ligand excluded by PLIPNA.61: 4 residues within 4Å:- Chain A: U.2529, U.2595, C.2596
- Chain D: W.242
Ligand excluded by PLIPNA.62: 4 residues within 4Å:- Chain 2: W.41, N.44
- Chain A: G.1404, G.1405
Ligand excluded by PLIPNA.63: 3 residues within 4Å:- Chain A: G.2532, U.2533, U.2598
Ligand excluded by PLIPNA.64: 5 residues within 4Å:- Chain A: G.873, A.2100, G.2101, C.2463, C.2464
Ligand excluded by PLIPNA.65: 3 residues within 4Å:- Chain A: G.129, C.130, G.131
Ligand excluded by PLIPNA.66: 4 residues within 4Å:- Chain A: C.1882, A.1883, G.1884, U.1885
Ligand excluded by PLIPNA.67: 4 residues within 4Å:- Chain A: G.611, U.612, A.617, A.619
Ligand excluded by PLIPNA.68: 3 residues within 4Å:- Chain A: C.1693, G.1694, G.1695
Ligand excluded by PLIPNA.69: 6 residues within 4Å:- Chain A: U.297, U.324, A.328, C.331
- Chain U: S.94, N.95
Ligand excluded by PLIPNA.70: 4 residues within 4Å:- Chain A: U.612, U.613, C.622, G.889
Ligand excluded by PLIPNA.71: 3 residues within 4Å:- Chain A: G.929, U.930, G.1012
Ligand excluded by PLIPNA.72: 3 residues within 4Å:- Chain A: G.625, U.2045, G.2046
Ligand excluded by PLIPNA.73: 6 residues within 4Å:- Chain A: U.380, U.381, U.387, C.388
- Chain N: K.193, A.194
Ligand excluded by PLIPNA.74: 3 residues within 4Å:- Chain A: G.453, G.464
- Chain E: R.55
Ligand excluded by PLIPNA.75: 4 residues within 4Å:- Chain A: G.2573, U.2574, U.2575, G.2580
Ligand excluded by PLIPNA.165: 6 residues within 4Å:- Chain B: G.21, G.22, U.55, A.57, G.58, C.59
Ligand excluded by PLIPNA.177: 5 residues within 4Å:- Chain E: D.45, T.94, E.95, K.96, D.97
Ligand excluded by PLIPNA.180: 5 residues within 4Å:- Chain A: A.2665
- Chain K: R.57, V.58, I.60, Y.66
Ligand excluded by PLIPNA.185: 5 residues within 4Å:- Chain N: N.106, F.109, P.110, N.111, L.112
Ligand excluded by PLIPNA.188: 4 residues within 4Å:- Chain R: D.20, G.22, S.24, S.46
Ligand excluded by PLIPNA.189: 5 residues within 4Å:- Chain A: G.2648
- Chain S: S.70, V.72, D.73
- Ligands: NA.190
Ligand excluded by PLIPNA.190: 7 residues within 4Å:- Chain A: U.2647, G.2648
- Chain S: K.69, S.70, V.72, W.75
- Ligands: NA.189
Ligand excluded by PLIP- 13 x CL: CHLORIDE ION(Non-functional Binders)
CL.76: 6 residues within 4Å:- Chain A: G.2570, A.2584
- Chain L: K.14, I.32, S.33, P.45
Ligand excluded by PLIPCL.77: 4 residues within 4Å:- Chain A: G.1287, G.1288, A.1316, A.1317
Ligand excluded by PLIPCL.78: 3 residues within 4Å:- Chain A: G.633
- Chain M: Q.7, H.13
Ligand excluded by PLIPCL.79: 4 residues within 4Å:- Chain A: A.1585, A.1586, G.1634, G.1635
Ligand excluded by PLIPCL.80: 4 residues within 4Å:- Chain A: C.583, U.584
- Chain Z: R.21, R.28
Ligand excluded by PLIPCL.169: 3 residues within 4Å:- Chain C: F.169, K.175, K.178
Ligand excluded by PLIPCL.178: 4 residues within 4Å:- Chain F: K.137
- Chain O: R.37, K.38, N.107
Ligand excluded by PLIPCL.181: 4 residues within 4Å:- Chain G: P.36
- Chain K: N.123, I.124, K.125
Ligand excluded by PLIPCL.182: 4 residues within 4Å:- Chain K: G.61, N.62, G.65, Y.66
Ligand excluded by PLIPCL.186: 6 residues within 4Å:- Chain N: N.106, R.113, V.114, L.157, R.158, T.159
Ligand excluded by PLIPCL.187: 3 residues within 4Å:- Chain A: G.733
- Chain P: N.44, R.47
Ligand excluded by PLIPCL.191: 2 residues within 4Å:- Chain S: F.25, K.118
Ligand excluded by PLIPCL.197: 3 residues within 4Å:- Chain A: G.1257, A.1316
- Chain Z: R.75
Ligand excluded by PLIP- 98 x SR: STRONTIUM ION(Non-functional Binders)
SR.81: 3 residues within 4Å:- Chain A: U.811, G.812, G.842
Ligand excluded by PLIPSR.82: 2 residues within 4Å:- Chain A: G.1477, G.1479
Ligand excluded by PLIPSR.83: 3 residues within 4Å:- Chain A: A.632, C.1341, G.1342
Ligand excluded by PLIPSR.84: 2 residues within 4Å:- Chain A: A.1742, A.1743
Ligand excluded by PLIPSR.85: 1 residues within 4Å:- Chain A: C.881
Ligand excluded by PLIPSR.86: 2 residues within 4Å:- Chain A: G.1043
- Chain J: S.10
Ligand excluded by PLIPSR.87: 5 residues within 4Å:- Chain A: U.135, G.136, G.171, A.172
- Chain N: L.157
Ligand excluded by PLIPSR.88: 4 residues within 4Å:- Chain A: A.1735, U.1736, U.1737, G.2573
Ligand excluded by PLIPSR.89: 4 residues within 4Å:- Chain A: C.76, A.77, C.78
- Chain U: D.68
Ligand excluded by PLIPSR.90: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPSR.91: 2 residues within 4Å:- Chain A: U.653, G.670
Ligand excluded by PLIPSR.92: 3 residues within 4Å:- Chain A: C.1408, C.1409, G.1426
Ligand excluded by PLIPSR.93: 2 residues within 4Å:- Chain A: U.443, C.467
Ligand excluded by PLIPSR.94: 3 residues within 4Å:- Chain A: A.1492, A.1666, C.1667
Ligand excluded by PLIPSR.95: 1 residues within 4Å:- Chain A: G.2620
Ligand excluded by PLIPSR.96: 2 residues within 4Å:- Chain A: A.1705, G.1706
Ligand excluded by PLIPSR.97: 1 residues within 4Å:- Chain A: G.460
Ligand excluded by PLIPSR.98: 2 residues within 4Å:- Chain A: G.1047, C.1115
Ligand excluded by PLIPSR.99: 2 residues within 4Å:- Chain A: G.2713, G.2743
Ligand excluded by PLIPSR.100: 1 residues within 4Å:- Chain A: G.492
Ligand excluded by PLIPSR.101: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPSR.102: 1 residues within 4Å:- Chain A: A.2541
Ligand excluded by PLIPSR.103: 3 residues within 4Å:- Chain A: U.1097, G.1098, A.1235
Ligand excluded by PLIPSR.104: 1 residues within 4Å:- Chain A: G.1531
Ligand excluded by PLIPSR.105: 2 residues within 4Å:- Chain A: A.521, U.522
Ligand excluded by PLIPSR.106: 2 residues within 4Å:- Chain A: U.765, U.852
Ligand excluded by PLIPSR.107: 3 residues within 4Å:- Chain A: G.2409, U.2410, C.2411
Ligand excluded by PLIPSR.108: 2 residues within 4Å:- Chain A: A.1279, G.1280
Ligand excluded by PLIPSR.109: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPSR.110: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPSR.111: 3 residues within 4Å:- Chain A: G.75, C.76
- Chain U: D.68
Ligand excluded by PLIPSR.112: 3 residues within 4Å:- Chain A: A.2453, G.2454
- Chain M: D.36
Ligand excluded by PLIPSR.113: 2 residues within 4Å:- Chain A: G.1671, U.1684
Ligand excluded by PLIPSR.114: 3 residues within 4Å:- Chain A: A.2734, U.2737, G.2738
Ligand excluded by PLIPSR.115: 3 residues within 4Å:- Chain A: A.1873, A.1874, U.1875
Ligand excluded by PLIPSR.116: 1 residues within 4Å:- Chain A: U.2004
Ligand excluded by PLIPSR.117: 2 residues within 4Å:- Chain A: C.1443, G.1472
Ligand excluded by PLIPSR.118: 1 residues within 4Å:- Chain A: G.2079
Ligand excluded by PLIPSR.119: 1 residues within 4Å:- Chain A: C.1678
Ligand excluded by PLIPSR.120: 2 residues within 4Å:- Chain A: A.2290, A.2291
Ligand excluded by PLIPSR.121: 5 residues within 4Å:- Chain A: U.809, C.810, G.842, U.843, G.844
Ligand excluded by PLIPSR.122: 1 residues within 4Å:- Chain A: G.2684
Ligand excluded by PLIPSR.123: 2 residues within 4Å:- Chain 3: R.42
- Chain A: U.380
Ligand excluded by PLIPSR.124: 2 residues within 4Å:- Chain A: G.2798
- Chain D: N.27
Ligand excluded by PLIPSR.125: 1 residues within 4Å:- Chain A: U.2545
Ligand excluded by PLIPSR.126: 2 residues within 4Å:- Chain A: A.671, G.672
Ligand excluded by PLIPSR.127: 4 residues within 4Å:- Chain 1: G.40, K.41
- Chain A: C.1450, A.1451
Ligand excluded by PLIPSR.128: 2 residues within 4Å:- Chain A: A.1121, G.1122
Ligand excluded by PLIPSR.129: 1 residues within 4Å:- Chain A: G.1101
Ligand excluded by PLIPSR.130: 4 residues within 4Å:- Chain A: U.1420, G.1421, U.1712
- Ligands: NA.59
Ligand excluded by PLIPSR.131: 2 residues within 4Å:- Chain A: G.2272, G.2273
Ligand excluded by PLIPSR.132: 1 residues within 4Å:- Chain A: G.2765
Ligand excluded by PLIPSR.133: 1 residues within 4Å:- Chain A: A.1803
Ligand excluded by PLIPSR.134: 2 residues within 4Å:- Chain A: C.224, G.226
Ligand excluded by PLIPSR.135: 1 residues within 4Å:- Chain A: U.2678
Ligand excluded by PLIPSR.136: 2 residues within 4Å:- Chain A: A.554, G.581
Ligand excluded by PLIPSR.137: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPSR.138: 6 residues within 4Å:- Chain A: A.1121, G.1122
- Chain J: K.150, V.153, T.154, P.155
Ligand excluded by PLIPSR.139: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPSR.140: 1 residues within 4Å:- Chain A: U.1823
Ligand excluded by PLIPSR.141: 4 residues within 4Å:- Chain A: C.1882, U.1885, G.1886, U.1927
Ligand excluded by PLIPSR.142: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPSR.143: 3 residues within 4Å:- Chain A: C.1117
- Chain B: C.91, G.92
Ligand excluded by PLIPSR.144: 2 residues within 4Å:- Chain A: G.1278, A.1279
Ligand excluded by PLIPSR.145: 5 residues within 4Å:- Chain A: A.1734, A.1735, U.1736, U.1737, G.1740
Ligand excluded by PLIPSR.146: 2 residues within 4Å:- Chain A: G.899, G.1280
Ligand excluded by PLIPSR.147: 3 residues within 4Å:- Chain A: A.367, G.368, A.418
Ligand excluded by PLIPSR.148: 5 residues within 4Å:- Chain A: U.2651, A.2799, A.2800, A.2804, G.2805
Ligand excluded by PLIPSR.149: 3 residues within 4Å:- Chain A: C.1090, C.1091
- Chain K: E.25
Ligand excluded by PLIPSR.150: 1 residues within 4Å:- Chain A: G.2688
Ligand excluded by PLIPSR.151: 2 residues within 4Å:- Chain A: A.2610, G.2611
Ligand excluded by PLIPSR.152: 3 residues within 4Å:- Chain A: G.2604, G.2605, G.2606
Ligand excluded by PLIPSR.153: 1 residues within 4Å:- Chain A: A.1415
Ligand excluded by PLIPSR.154: 4 residues within 4Å:- Chain A: U.2265, U.2266, G.2459
- Ligands: MG.54
Ligand excluded by PLIPSR.155: 2 residues within 4Å:- Chain A: G.2597, U.2598
Ligand excluded by PLIPSR.156: 4 residues within 4Å:- Chain A: G.821, G.822, U.823, C.2632
Ligand excluded by PLIPSR.157: 1 residues within 4Å:- Chain A: C.1524
Ligand excluded by PLIPSR.158: 2 residues within 4Å:- Chain A: U.2578, C.2579
Ligand excluded by PLIPSR.159: 2 residues within 4Å:- Chain A: A.1305
- Chain Z: S.113
Ligand excluded by PLIPSR.160: 2 residues within 4Å:- Chain A: G.2090, A.2091
Ligand excluded by PLIPSR.161: 2 residues within 4Å:- Chain A: G.1364, A.1681
Ligand excluded by PLIPSR.162: 1 residues within 4Å:- Chain A: U.1356
Ligand excluded by PLIPSR.166: 2 residues within 4Å:- Chain A: G.2510
- Chain B: C.91
Ligand excluded by PLIPSR.167: 2 residues within 4Å:- Chain B: G.78, G.102
Ligand excluded by PLIPSR.168: 1 residues within 4Å:- Chain B: A.44
Ligand excluded by PLIPSR.170: 5 residues within 4Å:- Chain A: A.2621
- Chain C: F.201, G.202, G.203, H.208
Ligand excluded by PLIPSR.171: 1 residues within 4Å:- Chain C: E.28
Ligand excluded by PLIPSR.172: 1 residues within 4Å:- Chain C: E.28
Ligand excluded by PLIPSR.173: 1 residues within 4Å:- Chain C: G.236
Ligand excluded by PLIPSR.175: 3 residues within 4Å:- Chain A: G.824, U.2603
- Chain D: Q.230
Ligand excluded by PLIPSR.176: 2 residues within 4Å:- Chain D: N.243, S.245
Ligand excluded by PLIPSR.179: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPSR.192: 2 residues within 4Å:- Chain S: Q.61, N.63
Ligand excluded by PLIPSR.193: 1 residues within 4Å:- Chain T: D.59
Ligand excluded by PLIPSR.200: 3 residues within 4Å:- Chain 1: K.10, N.12
- Chain A: U.850
Ligand excluded by PLIPSR.201: 3 residues within 4Å:- Chain 1: D.47
- Chain A: G.169, U.1461
Ligand excluded by PLIPSR.203: 3 residues within 4Å:- Chain 3: G.45, G.47, D.49
Ligand excluded by PLIPSR.204: 2 residues within 4Å:- Chain 3: D.59
- Chain A: U.2449
Ligand excluded by PLIP- 1 x EMK: (2R,3S,4R,5R,8R,10R,11R,12S,13S,14R)-2-ETHYL-3,4,10-TRIHYDROXY-3,5,6,8,10,12,14-HEPTAMETHYL-15-OXO-11-[(3,4,6-TRIDEOXY-3-{[3-(1-{(1S,2R)-1-(FLUOROMETHYL)-2-HYDROXY-2-[4-(METHYLSULFONYL)PHENYL]ETHYL}-1H-1,2,3-TRIAZOL-4-YL)PROPYL](METHYL)AMINO}-BETA-D-XYLO-HEXOPYRANOSYL)OXY]-1-OXA-6-AZACYCLOPENTADECAN-13-YL 2,6-DIDEOXY-3-C-METHYL-3-O-METHYL-ALPHA-L-RIBO-HEXOPYRANOSIDE(Non-functional Binders)
- 4 x CD: CADMIUM ION(Non-covalent)
CD.195: 4 residues within 4Å:- Chain V: C.3, C.6, C.29, C.33
4 PLIP interactions:4 interactions with chain V- Metal complexes: V:C.3, V:C.6, V:C.29, V:C.33
CD.198: 4 residues within 4Å:- Chain 0: C.30, C.33, C.48, C.51
4 PLIP interactions:4 interactions with chain 0- Metal complexes: 0:C.30, 0:C.33, 0:C.48, 0:C.51
CD.199: 4 residues within 4Å:- Chain 1: C.19, C.22, C.34, C.37
4 PLIP interactions:4 interactions with chain 1- Metal complexes: 1:C.19, 1:C.22, 1:C.34, 1:C.37
CD.202: 4 residues within 4Å:- Chain 3: C.11, C.14, C.71, C.74
4 PLIP interactions:4 interactions with chain 3- Metal complexes: 3:C.11, 3:C.14, 3:C.71, 3:C.74
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- -
- Release Date
- 2012-06-20
- Peptides
- 50S ribosomal protein L2P: C
50S ribosomal protein L3P: D
50S ribosomal protein L4P: E
50S ribosomal protein L5P: F
50S ribosomal protein L6P: G
50S ribosomal protein L7Ae: H
50S ribosomal protein L10E: I
50S ribosomal protein L10e: J
50S ribosomal protein L13P: K
50S ribosomal protein L14P: L
50S ribosomal protein L15P: M
50S ribosomal protein L15e: N
50S ribosomal protein L18P: O
50S ribosomal protein L18e: P
50S ribosomal protein L19e: Q
50S ribosomal protein L21e: R
50S ribosomal protein L22P: S
50S ribosomal protein L23P: T
50S ribosomal protein L24P: U
50S ribosomal protein L24e: V
50S ribosomal protein L29P: W
50S ribosomal protein L30P: X
50S ribosomal protein L31e: Y
50S ribosomal protein L32e: Z
50S ribosomal protein L37Ae: 0
50S ribosomal protein L37e: 1
50S ribosomal protein L39e: 2
50S ribosomal protein L44E: 3 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:C
AD
BE
CF
DG
EH
FI
GJ
HK
IL
JM
KN
LO
MP
NQ
OR
PS
QT
RU
SV
TW
UX
VY
WZ
X0
Y1
Z2
13
2
SMTL ID : 3ow2.1
Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit
50S ribosomal protein L2P
50S ribosomal protein L3P
50S ribosomal protein L4P
50S ribosomal protein L5P
50S ribosomal protein L6P
50S ribosomal protein L7Ae
50S ribosomal protein L10E
50S ribosomal protein L10e
50S ribosomal protein L13P
50S ribosomal protein L14P
50S ribosomal protein L15P
50S ribosomal protein L15e
50S ribosomal protein L18P
50S ribosomal protein L18e
50S ribosomal protein L19e
50S ribosomal protein L21e
50S ribosomal protein L22P
50S ribosomal protein L23P
50S ribosomal protein L24P
50S ribosomal protein L24e
50S ribosomal protein L29P
50S ribosomal protein L30P
50S ribosomal protein L31e
50S ribosomal protein L32e
50S ribosomal protein L37Ae
50S ribosomal protein L37e
50S ribosomal protein L39e
50S ribosomal protein L44E
Related Entries With Identical Sequence
1jj2.1 | 1k73.1 | 1k8a.1 | 1k9m.1 | 1kc8.1 | 1kd1.1 | 1kqs.1 | 1m1k.1 | 1m90.1 | 1n8r.1 | 1nji.1 | 1q7y.1 | 1q81.1 | 1q82.1 | 1q86.1 | 1qvf.1 | 1qvg.1 | 1s72.1 | 1vq4.1 | 1vq5.1 | 1vq6.1 | 1vq7.1 | 1vq8.1 | 1vq9.1 | 1vqk.1 | 1vql.1 | 1vqm.1 | 1vqn.1 | 1vqo.1 | 1vqp.1 more...less...1w2b.1 | 1yhq.1 | 1yi2.1 | 1yij.1 | 1yit.1 | 1yj9.1 | 1yjn.1 | 1yjw.1 | 2otj.1 | 2otl.1 | 2qa4.1 | 2qex.1 | 3cc2.1 | 3cc4.1 | 3cc7.1 | 3cce.1 | 3ccj.1 | 3ccl.1 | 3ccm.1 | 3ccq.1 | 3ccr.1 | 3ccs.1 | 3ccu.1 | 3ccv.1 | 3cd6.1 | 3cma.1 | 3cme.1 | 3cpw.1 | 3cxc.1 | 3g4s.1 | 3g6e.1 | 3g71.1 | 3i55.1 | 3i56.1 | 4v4p.1 | 4v4r.1 | 4v4s.1 | 4v4t.1 | 4v9f.1