- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NAG- FUL: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-FUC.2: 6 residues within 4Å:- Chain A: P.335, G.336, F.337, S.338, N.341, N.342
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.336
NAG-NAG-FUC.18: 6 residues within 4Å:- Chain B: P.335, G.336, F.337, S.338, N.341, N.342
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:G.336
- 2 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-FUC.3: 6 residues within 4Å:- Chain A: N.106, N.188, K.190, S.191, R.219, K.476
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:N.106
- Hydrogen bonds: A:N.188, A:N.188, A:S.191, A:R.219
- Water bridges: A:K.190, A:T.108, A:T.108, A:T.108
NAG-FUC.19: 6 residues within 4Å:- Chain B: N.106, N.188, K.190, S.191, R.219, K.476
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:N.106
- Hydrogen bonds: B:N.188, B:N.188, B:S.191, B:R.219
- Water bridges: B:K.190, B:T.108, B:T.108, B:S.191
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.4: 2 residues within 4Å:- Chain A: R.14, N.57
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.14
NAG.5: 4 residues within 4Å:- Chain A: R.465, K.469, E.482, N.485
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:K.469
- Hydrogen bonds: A:R.465, A:N.485
- Water bridges: A:R.465
NAG.6: 1 residues within 4Å:- Chain A: N.256
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.256
- Water bridges: A:N.256, A:E.259
NAG.20: 2 residues within 4Å:- Chain B: R.14, N.57
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.14
NAG.21: 4 residues within 4Å:- Chain B: R.465, K.469, E.482, N.485
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:K.469
- Hydrogen bonds: B:R.465, B:N.485
- Water bridges: B:R.465
NAG.22: 1 residues within 4Å:- Chain B: N.256
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.256
- Water bridges: B:N.256
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.7: 4 residues within 4Å:- Chain A: Q.316, G.413, N.414, N.415
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.316, A:N.414, A:N.415
SO4.8: 5 residues within 4Å:- Chain A: R.520, F.521
- Chain B: F.525, K.528
- Ligands: SO4.24
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:R.520
- Salt bridges: A:H.372, B:K.528
SO4.9: 2 residues within 4Å:- Chain A: R.347, Q.351
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.351
- Salt bridges: A:R.347
SO4.10: 3 residues within 4Å:- Chain A: K.323, Y.420, R.515
5 PLIP interactions:5 interactions with chain A- Water bridges: A:R.515, A:R.515, A:R.515
- Salt bridges: A:K.323, A:R.515
SO4.23: 4 residues within 4Å:- Chain B: Q.316, G.413, N.414, N.415
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Q.316, B:N.414, B:N.415
SO4.24: 5 residues within 4Å:- Chain A: F.525, K.528
- Chain B: R.520, F.521
- Ligands: SO4.8
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:R.520
- Salt bridges: B:H.372, A:K.528
SO4.25: 2 residues within 4Å:- Chain B: R.347, Q.351
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.351
- Salt bridges: B:R.347
SO4.26: 3 residues within 4Å:- Chain B: K.323, Y.420, R.515
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:Y.420
- Water bridges: B:R.515, B:R.515, B:R.515
- Salt bridges: B:K.323, B:R.515
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x DEP: DIETHYL PHOSPHONATE(Covalent)
DEP.13: 11 residues within 4Å:- Chain A: G.115, G.116, G.117, S.198, A.199, W.231, L.286, V.288, F.329, F.398, H.438
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:W.231, A:L.286, A:V.288, A:F.329
- Hydrogen bonds: A:G.116, A:G.117, A:A.199
- Salt bridges: A:H.438
DEP.29: 11 residues within 4Å:- Chain B: G.115, G.116, G.117, S.198, A.199, W.231, L.286, V.288, F.329, F.398, H.438
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:W.231, B:L.286, B:V.288, B:F.329
- Hydrogen bonds: B:G.116, B:G.117, B:A.199
- Salt bridges: B:H.438
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.14: 6 residues within 4Å:- Chain A: W.231, T.234, E.238, R.242, S.287, V.288
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:W.231, A:E.238, A:R.242, A:R.242, A:V.288
- Water bridges: A:L.286
GOL.15: 6 residues within 4Å:- Chain A: L.18, L.29, Y.61, W.98, D.129, K.131
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:W.98, A:D.129, A:K.131
GOL.16: 8 residues within 4Å:- Chain A: M.81, S.425, K.427, L.428, P.429, Y.440, E.443, Y.456
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.425, A:S.425, A:K.427
- Water bridges: A:H.77, A:Y.456
GOL.30: 6 residues within 4Å:- Chain B: W.231, T.234, E.238, R.242, S.287, V.288
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:W.231, B:E.238, B:R.242, B:R.242, B:V.288
- Water bridges: B:L.286
GOL.31: 6 residues within 4Å:- Chain B: L.18, L.29, Y.61, W.98, D.129, K.131
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:W.98, B:D.129, B:K.131
GOL.32: 8 residues within 4Å:- Chain B: M.81, S.425, K.427, L.428, P.429, Y.440, E.443, Y.456
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:S.425, B:S.425, B:K.427, B:Y.456
- Water bridges: B:H.77
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nachon, F. et al., Role of Water in Aging of Human Butyrylcholinesterase Inhibited by Echothiophate: The Crystal Structure Suggests Two Alternative Mechanisms of Aging. Biochemistry (2005)
- Release Date
- 2005-02-01
- Peptides
- BUTYRYLCHOLINESTERASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NAG- FUL: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x DEP: DIETHYL PHOSPHONATE(Covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nachon, F. et al., Role of Water in Aging of Human Butyrylcholinesterase Inhibited by Echothiophate: The Crystal Structure Suggests Two Alternative Mechanisms of Aging. Biochemistry (2005)
- Release Date
- 2005-02-01
- Peptides
- BUTYRYLCHOLINESTERASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A