SMTL ID : 1xu9.1

Crystal Structure of the Interface Closed Conformation of 11b-hydroxysteroid dehydrogenase isozyme 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-tetramer

Ligands

4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 28 residues within 4Å: Chain A: G.35, A.36, S.37, K.38, G.39, I.40, A.59, R.60, S.61, G.85, T.86, M.87, N.113, H.114, I.115, V.162, S.163, S.164, Y.177, K.181, L.209, G.210, L.211, I.212, T.214, T.216, A.217 Ligands: CPS.2 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:L.209 Hydrogen bonds: A:G.35, A:S.37, A:S.37, A:K.38, A:I.40, A:R.60, A:S.61, A:T.86, A:M.87, A:N.113, A:N.113, A:I.115, A:S.164, A:K.181, A:I.212, A:I.212, A:T.214, A:T.216 Water bridges: A:S.37, A:K.38, A:G.41, A:R.60, A:N.117, A:N.117, A:N.117, A:N.117, A:T.216 Salt bridges: A:K.38, A:R.60 NDP.4: 29 residues within 4Å: Chain B: G.35, A.36, S.37, K.38, G.39, I.40, A.59, R.60, S.61, G.85, T.86, M.87, E.88, N.113, H.114, I.115, V.162, S.163, S.164, Y.177, K.181, L.209, G.210, L.211, I.212, T.214, T.216, A.217 Ligands: CPS.5 30 PLIP interactions: 30 interactions with chain B Hydrophobic interactions: B:L.209 Hydrogen bonds: B:G.35, B:S.37, B:S.37, B:K.38, B:I.40, B:R.60, B:S.61, B:T.86, B:T.86, B:M.87, B:N.113, B:N.113, B:I.115, B:Y.141, B:S.164, B:Y.177, B:K.181, B:I.212, B:I.212, B:T.214, B:T.214, B:T.216 Water bridges: B:G.41, B:R.60, B:T.116, B:N.117, B:T.216 Salt bridges: B:K.38, B:R.60 NDP.6: 28 residues within 4Å: Chain C: G.35, A.36, S.37, K.38, G.39, I.40, A.59, R.60, S.61, G.85, T.86, M.87, N.113, H.114, I.115, V.162, S.163, S.164, Y.177, K.181, L.209, G.210, L.211, I.212, T.214, T.216, A.217 Ligands: CPS.7 25 PLIP interactions: 25 interactions with chain C Hydrophobic interactions: C:L.209 Hydrogen bonds: C:S.37, C:S.37, C:K.38, C:K.38, C:I.40, C:R.60, C:S.61, C:T.86, C:M.87, C:N.113, C:N.113, C:I.115, C:K.181, C:I.212, C:I.212, C:T.214, C:T.216 Water bridges: C:K.38, C:K.38, C:S.61, C:S.61 Salt bridges: C:K.38, C:K.38, C:R.60 NDP.8: 28 residues within 4Å: Chain D: G.35, A.36, S.37, K.38, G.39, I.40, A.59, R.60, S.61, G.85, T.86, M.87, N.113, H.114, I.115, V.162, S.163, S.164, Y.177, K.181, L.209, G.210, L.211, I.212, T.214, T.216, A.217 Ligands: CPS.9 29 PLIP interactions: 29 interactions with chain D Hydrophobic interactions: D:L.209 Hydrogen bonds: D:G.35, D:S.37, D:S.37, D:K.38, D:I.40, D:R.60, D:S.61, D:T.86, D:T.86, D:M.87, D:N.113, D:N.113, D:I.115, D:S.164, D:Y.177, D:K.181, D:I.212, D:I.212, D:T.214, D:T.214, D:T.216 Water bridges: D:K.38, D:G.41, D:R.60, D:T.116, D:T.216 Salt bridges: D:K.38, D:R.60

4 x CPS: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE(Non-covalent)

CPS.2: 17 residues within 4Å: Chain A: I.115, L.165, Y.171, Y.177, L.211, A.217, A.220, Q.228, S.254, S.255, T.258 Chain B: Y.274, S.277, Y.278 Chain D: W.257 Ligands: NDP.1, MES.3 14 PLIP interactions: 12 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:L.165, A:Y.171, A:Y.177, A:A.217, A:A.220, B:Y.274 Hydrogen bonds: A:Y.171, A:Y.177, A:S.254, B:Y.278 Water bridges: A:D.253, A:D.253, A:S.254, A:S.255 CPS.5: 18 residues within 4Å: Chain A: Y.274, S.277 Chain B: I.115, T.118, L.120, L.165, Y.171, Y.177, L.211, A.217, A.220, V.221, H.226, M.227, Q.228, T.258 Chain C: W.257 Ligands: NDP.4 14 PLIP interactions: 12 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:T.118, B:L.120, B:L.165, B:Y.177, B:Y.177, B:A.217, B:A.220, A:Y.274 Hydrogen bonds: B:Y.177, B:Q.228 Water bridges: B:Q.228, B:D.253, B:D.253, A:S.277 CPS.7: 15 residues within 4Å: Chain B: W.257 Chain C: I.115, T.118, L.120, L.165, Y.171, Y.177, L.211, A.217, A.220, S.255, W.257, T.258 Chain D: Y.274 Ligands: NDP.6 13 PLIP interactions: 12 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:I.115, C:T.118, C:L.120, C:L.165, C:Y.177, C:Y.177, C:A.217, C:A.220, D:Y.274 Hydrogen bonds: C:Y.171, C:Y.177, C:S.255 Water bridges: C:D.253 CPS.9: 15 residues within 4Å: Chain A: W.257 Chain C: Y.274 Chain D: I.115, L.120, L.165, Y.171, Y.177, L.211, A.217, A.220, V.221, S.255, W.257, T.258 Ligands: NDP.8 15 PLIP interactions: 14 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:I.115, D:L.120, D:L.165, D:Y.177, D:Y.177, D:L.211, D:A.217, D:A.220, D:V.221, C:Y.274 Hydrogen bonds: D:Y.177, D:S.255, D:S.255 Water bridges: D:D.253, D:D.253

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3: 10 residues within 4Å: Chain A: L.120, Y.171, P.172, V.221, S.222, V.225 Chain B: Y.278, M.280, R.282 Ligands: CPS.2 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.282, A:S.222

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hosfield, D.J. et al., Conformational Flexibility in Crystal Structures of Human 11beta-hydroxysteroid dehydrogenase type I provide insights into glucocorticoid interconversion and enzyme regulation. J.Biol.Chem. (2005)

Release Date

2004-11-02

Peptides

Corticosteroid 11-beta-dehydrogenase, isozyme 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Corticosteroid 11-beta-dehydrogenase, isozyme 1

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