SMTL ID : 1y93.1

Crystal structure of the catalytic domain of human MMP12 complexed with acetohydroxamic acid at atomic resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.03 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.114, H.118, H.124 Ligands: HAE.6 5 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:H.114, A:H.118, A:H.124, H2O.5, HAE.6 ZN.2: 6 residues within 4Å: Chain A: H.64, D.66, H.68, H.79, F.81, H.92 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.64, A:D.66, A:H.79, A:H.92

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 7 residues within 4Å: Chain A: D.54, I.55, L.56, G.86, I.87, G.88, D.90 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.54, A:G.86, A:G.88, A:D.90, H2O.1, H2O.2 CA.4: 6 residues within 4Å: Chain A: T.18, D.20, E.95, E.97, F.98, W.99 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.20, A:E.95, A:E.95, H2O.1, H2O.1 CA.5: 8 residues within 4Å: Chain A: D.71, G.72, K.73, G.74, I.76, L.77, D.94, E.97 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.71, A:G.72, A:G.74, A:I.76, A:D.94, A:E.97

1 x HAE: ACETOHYDROXAMIC ACID(Non-covalent)

HAE.6: 8 residues within 4Å: Chain A: I.76, A.78, H.79, H.114, E.115, H.118, H.124 Ligands: ZN.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:H.79 Hydrogen bonds: A:A.78, A:H.114, A:H.118, A:H.124 Water bridges: A:A.78, A:E.115, A:P.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bertini, I. et al., Conformational variability of matrix metalloproteinases: Beyond a single 3D structure. Proc.Natl.Acad.Sci.Usa (2005)

Release Date

2005-04-26

Peptides

Macrophage metalloelastase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Macrophage metalloelastase

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