SMTL ID : 1ycm.1

Solution Structure of matrix metalloproteinase 12 (MMP12) in the presence of N-Isobutyl-N-[4-methoxyphenylsulfonyl]glycyl hydroxamic acid (NNGH)

Coordinates

PDB Format Compare

Method

SOLUTION NMR

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.114, H.118, H.124, M.132, P.134 Ligands: NGH.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.114, A:H.118, A:H.124 ZN.2: 5 residues within 4Å: Chain A: H.64, D.66, A.69, H.79, H.92 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.64, A:D.66, A:H.79, A:H.92

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 7 residues within 4Å: Chain A: T.18, P.19, D.20, E.95, E.97, F.98, W.99 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:T.18, A:D.20, A:E.95, A:E.95, A:E.97 CA.4: 6 residues within 4Å: Chain A: D.71, G.72, G.74, I.76, D.94, E.97 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:G.72, A:I.76, A:D.94, A:D.94, A:E.97 CA.5: 5 residues within 4Å: Chain A: G.86, I.87, G.88, G.89, D.90 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:G.86, A:G.88, A:D.90, A:D.90

1 x NGH: N-ISOBUTYL-N-[4-METHOXYPHENYLSULFONYL]GLYCYL HYDROXAMIC ACID(Non-covalent)

NGH.6: 16 residues within 4Å: Chain A: I.76, L.77, A.78, H.79, L.110, T.111, H.114, E.115, H.118, V.131, F.133, P.134, T.135, Y.136, K.137 Ligands: ZN.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.76, A:L.77, A:T.111, A:Y.136, A:Y.136 Hydrogen bonds: A:A.78, A:A.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bertini, I. et al., Conformational variability of matrix metalloproteinases: Beyond a single 3D structure. Proc.Natl.Acad.Sci.Usa (2005)

Release Date

2005-04-19

Peptides

Macrophage metalloelastase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Macrophage metalloelastase

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