SMTL ID : 2hu6.1

Crystal structure of human MMP-12 in complex with acetohydroxamic acid and a bicyclic inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.32 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.114, H.118, H.124 Ligands: HAE.7 5 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions Metal complexes: A:H.114, A:H.118, A:H.124, HAE.7, H2O.10 ZN.2: 4 residues within 4Å: Chain A: H.64, D.66, H.79, H.92 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.64, A:D.66, A:H.79, A:H.92

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: A.53, D.54, G.86, I.87, G.88, D.90 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.54, A:G.86, A:G.88, A:D.90, H2O.1, H2O.3 CA.4: 3 residues within 4Å: Chain A: D.20, E.95, E.97 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.20, A:E.95, A:E.95, H2O.1, H2O.2 CA.5: 6 residues within 4Å: Chain A: D.71, G.72, G.74, I.76, D.94, E.97 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.71, A:G.72, A:G.74, A:I.76, A:D.94, A:E.97

1 x 37A: (1S,5S,7R)-N~7~-(BIPHENYL-4-YLMETHYL)-N~3~-HYDROXY-6,8-DIOXA-3-AZABICYCLO[3.2.1]OCTANE-3,7-DICARBOXAMIDE(Non-covalent)

37A.6: 14 residues within 4Å: Chain A: G.75, I.76, L.77, A.78, L.110, H.114, E.115, V.131, F.133, P.134, T.135, Y.136, K.137 Ligands: HAE.7 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.110, A:H.114, A:V.131 Hydrogen bonds: A:G.75, A:G.75, A:L.77, A:A.78, A:P.134 Water bridges: A:Y.136 pi-Stacking: A:H.114

1 x HAE: ACETOHYDROXAMIC ACID(Non-covalent)

HAE.7: 8 residues within 4Å: Chain A: A.78, H.79, H.114, E.115, H.118, H.124 Ligands: ZN.1, 37A.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.78 Water bridges: A:A.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mannino, C. et al., Synthesis of bicyclic molecular scaffolds (BTAa): an investigation towards new selective MMP-12 inhibitors. Bioorg.Med.Chem. (2006)

Release Date

2006-12-19

Peptides

Macrophage metalloelastase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Macrophage metalloelastase

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