SMTL ID : 7ovy.1

Crystal structure of a dimeric based inhibitor JG34 in complex with the MMP-12 catalytic domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.24 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.114, H.118, H.124 Ligands: 2IF.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.114, A:H.118, A:H.124 ZN.2: 4 residues within 4Å: Chain A: H.64, D.66, H.79, H.92 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.64, A:D.66, A:H.79, A:H.92

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain A: D.54, G.86, I.87, G.88, D.90 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.54, A:G.86, A:G.88, A:D.90, H2O.1, H2O.3 CA.4: 3 residues within 4Å: Chain A: D.20, E.95, E.97 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.20, A:E.95, A:E.95, H2O.6, H2O.7 CA.5: 6 residues within 4Å: Chain A: D.71, G.72, G.74, I.76, D.94, E.97 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.71, A:G.72, A:G.74, A:I.76, A:D.94, A:E.97

1 x 2IF: ~{N}1,~{N}3-bis[4-[[(4~{R})-4-[[4-[[3,5-bis(bromanyl)phenyl]methoxy]phenyl]sulfonylamino]-5-(oxidanylamino)-5-oxidanylidene-pentyl]amino]-4-oxidanylidene-butyl]benzene-1,3-dicarboxamide(Non-covalent)

2IF.6: 19 residues within 4Å: Chain A: G.75, I.76, L.77, A.78, L.110, H.114, E.115, H.118, H.124, P.128, A.130, V.131, F.133, P.134, T.135, Y.136, K.137 Ligands: ZN.1, EDO.7 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.131, A:F.133 Hydrogen bonds: A:A.78, A:A.78, A:P.134 Water bridges: A:G.82 pi-Stacking: A:H.114 Halogen bonds: A:P.128

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 3 residues within 4Å: Chain A: G.75, I.76 Ligands: 2IF.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.75

1 x PGR: R-1,2-PROPANEDIOL(Non-covalent)

PGR.8: 5 residues within 4Å: Chain A: M.1, G.2, P.3, G.121, G.123 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.1, A:G.2, A:G.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cuffaro, D. et al., Discovery of Dimeric Arylsulfonamides as Potent ADAM8 Inhibitors. Acs Med.Chem.Lett. (2021)

Release Date

2021-10-27

Peptides

Macrophage metalloelastase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Macrophage metalloelastase

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