SMTL ID : 3lik.1

Human MMP12 in complex with non-zinc chelating inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.114, H.118, H.124 Ligands: HAE.7 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.114, A:H.118, A:H.124, HAE.7 ZN.2: 4 residues within 4Å: Chain A: H.64, D.66, H.79, H.92 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.64, A:D.66, A:H.79, A:H.92

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain A: D.54, G.86, I.87, G.88, D.90 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.54, A:G.86, A:G.88, A:D.90, H2O.1, H2O.1 CA.4: 3 residues within 4Å: Chain A: D.20, E.95, E.97 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.20, A:E.95, A:E.95, H2O.1, H2O.2 CA.5: 6 residues within 4Å: Chain A: D.71, G.72, G.74, I.76, D.94, E.97 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.71, A:G.72, A:G.74, A:I.76, A:D.94, A:E.97

1 x EEG: N-{3-[4-(4-phenylthiophen-2-yl)phenyl]propanoyl}-L-alpha-glutamyl-L-alpha-glutamyl-amide(Non-covalent)

EEG.6: 21 residues within 4Å: Chain A: G.74, G.75, I.76, L.77, A.78, L.110, T.111, H.114, E.115, P.128, K.129, A.130, V.131, F.133, P.134, T.135, Y.136, K.137, V.139, F.144 Ligands: HAE.7 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:T.111, A:V.131, A:Y.136, A:V.139, A:F.144 Hydrogen bonds: A:G.75, A:G.75, A:L.77, A:A.78, A:P.134, A:Y.136 Water bridges: A:G.74 pi-Stacking: A:H.114

1 x HAE: ACETOHYDROXAMIC ACID(Non-covalent)

HAE.7: 8 residues within 4Å: Chain A: A.78, H.79, H.114, E.115, H.118, H.124 Ligands: ZN.1, EEG.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.78

3 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.8: 3 residues within 4Å: Chain A: S.46, K.47, I.48 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.47, A:K.47, A:N.49 P6G.9: 4 residues within 4Å: Chain A: H.124, S.125, S.126, P.134 No protein-ligand interaction detected (PLIP) P6G.10: 5 residues within 4Å: Chain A: P.3, V.4, R.6, P.83, G.84 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Devel, L. et al., Insights from selective non-phosphinic inhibitors of MMP-12 tailored to fit with an S1' loop canonical conformation. J.Biol.Chem. (2010)

Release Date

2010-09-01

Peptides

Macrophage metalloelastase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Macrophage metalloelastase

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