SMTL ID : 1z7s.3 (4 other biounits)

The crystal structure of coxsackievirus A21

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-oligomer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: S.21, T.22, Q.23, S.24, N.63 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:S.21, A:S.24 CA.5: 5 residues within 4Å: Chain E: S.21, T.22, Q.23, S.24, N.63 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:S.21, E:S.24 CA.9: 5 residues within 4Å: Chain I: S.21, T.22, Q.23, S.24, N.63 2 PLIP interactions: 2 interactions with chain I Metal complexes: I:S.21, I:S.24 CA.13: 5 residues within 4Å: Chain M: S.21, T.22, Q.23, S.24, N.63 2 PLIP interactions: 2 interactions with chain M Metal complexes: M:S.21, M:S.24 CA.17: 5 residues within 4Å: Chain Q: S.21, T.22, Q.23, S.24, N.63 2 PLIP interactions: 2 interactions with chain Q Metal complexes: Q:S.21, Q:S.24 CA.21: 5 residues within 4Å: Chain U: S.21, T.22, Q.23, S.24, N.63 2 PLIP interactions: 2 interactions with chain U Metal complexes: U:S.21, U:S.24

12 x MYR: MYRISTIC ACID(Non-covalent)(Covalent)

MYR.2: 9 residues within 4Å: Chain A: Y.107, L.127, Y.154, P.176, M.189, I.191, Y.200, F.232, L.235 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.127, A:Y.154, A:Y.154, A:Y.154, A:I.191, A:Y.200, A:F.232, A:F.232, A:L.235 MYR.4: 11 residues within 4Å: Chain D: G.1, A.2, I.29, Y.31 Chain G: Q.20 Chain H: V.4, T.27, T.28, I.29, Y.31 Ligands: MYR.8 4 PLIP interactions: 2 interactions with chain H, 2 interactions with chain D Hydrophobic interactions: H:I.29, D:I.29, D:Y.31 Hydrogen bonds: H:T.27 MYR.6: 9 residues within 4Å: Chain E: Y.107, L.127, Y.154, P.176, M.189, I.191, Y.200, F.232, L.235 9 PLIP interactions: 9 interactions with chain E Hydrophobic interactions: E:L.127, E:Y.154, E:Y.154, E:Y.154, E:I.191, E:Y.200, E:F.232, E:F.232, E:L.235 MYR.8: 5 residues within 4Å: Chain H: G.1, A.2, I.29, Y.31 Ligands: MYR.4 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:I.29, H:Y.31 MYR.10: 9 residues within 4Å: Chain I: Y.107, L.127, Y.154, P.176, M.189, I.191, Y.200, F.232, L.235 9 PLIP interactions: 9 interactions with chain I Hydrophobic interactions: I:L.127, I:Y.154, I:Y.154, I:Y.154, I:I.191, I:Y.200, I:F.232, I:F.232, I:L.235 MYR.12: 5 residues within 4Å: Chain L: G.1, A.2, I.29, Y.31 Ligands: MYR.16 2 PLIP interactions: 2 interactions with chain L Hydrophobic interactions: L:I.29, L:Y.31 MYR.14: 9 residues within 4Å: Chain M: Y.107, L.127, Y.154, P.176, M.189, I.191, Y.200, F.232, L.235 9 PLIP interactions: 9 interactions with chain M Hydrophobic interactions: M:L.127, M:Y.154, M:Y.154, M:Y.154, M:I.191, M:Y.200, M:F.232, M:F.232, M:L.235 MYR.16: 11 residues within 4Å: Chain K: Q.20 Chain L: V.4, T.27, T.28, I.29, Y.31 Chain P: G.1, A.2, I.29, Y.31 Ligands: MYR.12 4 PLIP interactions: 2 interactions with chain L, 2 interactions with chain P Hydrophobic interactions: L:I.29, P:I.29, P:Y.31 Hydrogen bonds: L:T.27 MYR.18: 9 residues within 4Å: Chain Q: Y.107, L.127, Y.154, P.176, M.189, I.191, Y.200, F.232, L.235 9 PLIP interactions: 9 interactions with chain Q Hydrophobic interactions: Q:L.127, Q:Y.154, Q:Y.154, Q:Y.154, Q:I.191, Q:Y.200, Q:F.232, Q:F.232, Q:L.235 MYR.20: 11 residues within 4Å: Chain T: G.1, A.2, I.29, Y.31 Chain W: Q.20 Chain X: V.4, T.27, T.28, I.29, Y.31 Ligands: MYR.24 4 PLIP interactions: 2 interactions with chain X, 2 interactions with chain T Hydrophobic interactions: X:I.29, T:I.29, T:Y.31 Hydrogen bonds: X:T.27 MYR.22: 9 residues within 4Å: Chain U: Y.107, L.127, Y.154, P.176, M.189, I.191, Y.200, F.232, L.235 9 PLIP interactions: 9 interactions with chain U Hydrophobic interactions: U:L.127, U:Y.154, U:Y.154, U:Y.154, U:I.191, U:Y.200, U:F.232, U:F.232, U:L.235 MYR.24: 5 residues within 4Å: Chain X: G.1, A.2, I.29, Y.31 Ligands: MYR.20 2 PLIP interactions: 2 interactions with chain X Hydrophobic interactions: X:I.29, X:Y.31

6 x G: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)

G.3: 4 residues within 4Å: Chain B: W.38 Chain D: K.57 Chain Q: V.31, N.32 26 PLIP interactions: 2 interactions with chain H, 1 interactions with chain A, 2 interactions with chain D, 1 interactions with chain Q, 4 interactions with chain B, 4 interactions with chain J, 4 interactions with chain F, 4 interactions with chain N, 2 interactions with chain P, 2 interactions with chain L Hydrogen bonds: H:K.57, A:N.32, D:K.57, Q:N.32, P:K.57, L:K.57 Salt bridges: H:K.57, D:K.57, P:K.57, L:K.57 pi-Stacking: B:W.38, B:W.38, B:W.38, B:W.38, J:W.38, J:W.38, J:W.38, J:W.38, F:W.38, F:W.38, F:W.38, F:W.38, N:W.38, N:W.38, N:W.38, N:W.38 G.7: 2 residues within 4Å: Chain F: W.38 Chain H: K.57 Protein-ligand interaction information (PLIP) not available G.11: 2 residues within 4Å: Chain J: W.38 Chain L: K.57 Protein-ligand interaction information (PLIP) not available G.15: 4 residues within 4Å: Chain A: V.31, N.32 Chain N: W.38 Chain P: K.57 Protein-ligand interaction information (PLIP) not available G.19: 4 residues within 4Å: Chain M: V.31, N.32 Chain R: W.38 Chain T: K.57 13 PLIP interactions: 4 interactions with chain V, 4 interactions with chain R, 1 interactions with chain M, 2 interactions with chain T, 2 interactions with chain X pi-Stacking: V:W.38, V:W.38, V:W.38, V:W.38, R:W.38, R:W.38, R:W.38, R:W.38 Hydrogen bonds: M:N.32, T:K.57, X:K.57 Salt bridges: T:K.57, X:K.57 G.23: 2 residues within 4Å: Chain V: W.38 Chain X: K.57 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiao, C. et al., The crystal structure of coxsackievirus a21 and its interaction with icam-1. Structure (2005)

Release Date

2005-08-02

Peptides

Human COXSACKIEVIRUS A21: AEIMQU
Human COXSACKIEVIRUS A21: BFJNRV
Human coxsackievirus A21: CGKOSW
Human coxsackievirus A21: DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

E
1

I
1

M
1

Q
1

U
1

B
2

F
2

J
2

N
2

R
2

V
2

C
3

G
3

K
3

O
3

S
3

W
3

D
4

H
4

L
4

P
4

T
4

X
4

Human COXSACKIEVIRUS A21

Human COXSACKIEVIRUS A21

Human coxsackievirus A21

Human coxsackievirus A21

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