SMTL ID : 7tqu.1

Coxsackievirus A21 capsid subdomain in complex with mouse polyclonal antibody pAbC-1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-3-3-3-3-mer

Ligands

3 x MYR: MYRISTIC ACID(Non-covalent)

MYR.1: 12 residues within 4Å: Chain C: I.105, Y.107, F.125, I.152, Y.154, P.176, S.177, M.189, I.191, V.194, F.232, L.235 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:I.105, C:Y.154, C:Y.154, C:Y.154, C:P.176, C:I.191, C:V.194, C:F.232, C:F.232, C:F.232, C:L.235 Salt bridges: C:H.202 MYR.2: 12 residues within 4Å: Chain G: I.105, Y.107, L.127, M.129, I.152, Y.154, P.176, M.189, I.191, Y.200, F.232, L.235 11 PLIP interactions: 11 interactions with chain G Hydrophobic interactions: G:I.105, G:I.105, G:L.127, G:I.152, G:Y.154, G:Y.154, G:Y.154, G:I.191, G:I.191, G:F.232, G:F.232 MYR.3: 14 residues within 4Å: Chain K: I.105, Y.107, F.125, L.127, I.152, Y.154, P.176, I.178, M.189, I.191, V.194, Y.200, F.232, L.235 12 PLIP interactions: 12 interactions with chain K Hydrophobic interactions: K:I.105, K:I.105, K:L.127, K:Y.154, K:Y.154, K:Y.154, K:I.178, K:I.191, K:I.191, K:V.194, K:F.232, K:F.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Antanasijevic, A. et al., High-resolution structural analysis of enterovirus-reactive polyclonal antibodies in complex with whole virions. Pnas Nexus (2022)

Release Date

2023-01-04

Peptides

pAbC-1 heavy chain: A
pAbC-1 light chain: B
VP1: CGK
VP2: DHL
VP3: EIM
VP4: FJN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
a

G
e

K
i

D
b

H
f

L
j

E
c

I
g

M
k

F
d

J
h

N
l

pAbC-1 heavy chain

pAbC-1 light chain

VP1

VP2

VP3

VP4

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