SMTL ID : 1z7s.5 (4 other biounits)

The crystal structure of coxsackievirus A21

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-5-5-5-5-mer

Ligands

5 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: S.21, T.22, Q.23, S.24, N.63 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:S.21, A:S.24 CA.5: 5 residues within 4Å: Chain E: S.21, T.22, Q.23, S.24, N.63 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:S.21, E:S.24 CA.9: 5 residues within 4Å: Chain I: S.21, T.22, Q.23, S.24, N.63 2 PLIP interactions: 2 interactions with chain I Metal complexes: I:S.21, I:S.24 CA.13: 5 residues within 4Å: Chain M: S.21, T.22, Q.23, S.24, N.63 2 PLIP interactions: 2 interactions with chain M Metal complexes: M:S.21, M:S.24 CA.17: 5 residues within 4Å: Chain Q: S.21, T.22, Q.23, S.24, N.63 2 PLIP interactions: 2 interactions with chain Q Metal complexes: Q:S.21, Q:S.24

10 x MYR: MYRISTIC ACID(Non-covalent)(Covalent)

MYR.2: 9 residues within 4Å: Chain A: Y.107, L.127, Y.154, P.176, M.189, I.191, Y.200, F.232, L.235 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.127, A:Y.154, A:Y.154, A:Y.154, A:I.191, A:Y.200, A:F.232, A:F.232, A:L.235 MYR.4: 12 residues within 4Å: Chain D: G.1, A.2, I.29, Y.31 Chain G: Q.20 Chain H: V.4, T.27, T.28, I.29, Y.31 Ligands: MYR.8, MYR.20 4 PLIP interactions: 2 interactions with chain H, 2 interactions with chain D Hydrophobic interactions: H:I.29, D:I.29, D:Y.31 Hydrogen bonds: H:T.27 MYR.6: 9 residues within 4Å: Chain E: Y.107, L.127, Y.154, P.176, M.189, I.191, Y.200, F.232, L.235 9 PLIP interactions: 9 interactions with chain E Hydrophobic interactions: E:L.127, E:Y.154, E:Y.154, E:Y.154, E:I.191, E:Y.200, E:F.232, E:F.232, E:L.235 MYR.8: 12 residues within 4Å: Chain H: G.1, A.2, I.29, Y.31 Chain K: Q.20 Chain L: V.4, T.27, T.28, I.29, Y.31 Ligands: MYR.4, MYR.12 4 PLIP interactions: 2 interactions with chain L, 2 interactions with chain H Hydrophobic interactions: L:I.29, H:I.29, H:Y.31 Hydrogen bonds: L:T.27 MYR.10: 9 residues within 4Å: Chain I: Y.107, L.127, Y.154, P.176, M.189, I.191, Y.200, F.232, L.235 9 PLIP interactions: 9 interactions with chain I Hydrophobic interactions: I:L.127, I:Y.154, I:Y.154, I:Y.154, I:I.191, I:Y.200, I:F.232, I:F.232, I:L.235 MYR.12: 12 residues within 4Å: Chain L: G.1, A.2, I.29, Y.31 Chain O: Q.20 Chain P: V.4, T.27, T.28, I.29, Y.31 Ligands: MYR.8, MYR.16 3 PLIP interactions: 2 interactions with chain L, 1 interactions with chain P Hydrophobic interactions: L:I.29, L:Y.31, P:I.29 MYR.14: 9 residues within 4Å: Chain M: Y.107, L.127, Y.154, P.176, M.189, I.191, Y.200, F.232, L.235 9 PLIP interactions: 9 interactions with chain M Hydrophobic interactions: M:L.127, M:Y.154, M:Y.154, M:Y.154, M:I.191, M:Y.200, M:F.232, M:F.232, M:L.235 MYR.16: 12 residues within 4Å: Chain P: G.1, A.2, I.29, Y.31 Chain S: Q.20 Chain T: V.4, T.27, T.28, I.29, Y.31 Ligands: MYR.12, MYR.20 3 PLIP interactions: 2 interactions with chain P, 1 interactions with chain T Hydrophobic interactions: P:I.29, P:Y.31, T:I.29 MYR.18: 9 residues within 4Å: Chain Q: Y.107, L.127, Y.154, P.176, M.189, I.191, Y.200, F.232, L.235 9 PLIP interactions: 9 interactions with chain Q Hydrophobic interactions: Q:L.127, Q:Y.154, Q:Y.154, Q:Y.154, Q:I.191, Q:Y.200, Q:F.232, Q:F.232, Q:L.235 MYR.20: 12 residues within 4Å: Chain C: Q.20 Chain D: V.4, T.27, T.28, I.29, Y.31 Chain T: G.1, A.2, I.29, Y.31 Ligands: MYR.4, MYR.16 4 PLIP interactions: 2 interactions with chain T, 2 interactions with chain D Hydrophobic interactions: T:I.29, T:Y.31, D:I.29 Hydrogen bonds: D:T.27

5 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)

5GP.3: 2 residues within 4Å: Chain B: W.38 Chain D: K.57 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain D pi-Stacking: B:W.38, B:W.38, B:W.38, B:W.38 Hydrogen bonds: D:K.57 Salt bridges: D:K.57 5GP.7: 2 residues within 4Å: Chain F: W.38 Chain H: K.57 6 PLIP interactions: 2 interactions with chain H, 4 interactions with chain F Hydrogen bonds: H:K.57 Salt bridges: H:K.57 pi-Stacking: F:W.38, F:W.38, F:W.38, F:W.38 5GP.11: 2 residues within 4Å: Chain J: W.38 Chain L: K.57 6 PLIP interactions: 2 interactions with chain L, 4 interactions with chain J Hydrogen bonds: L:K.57 Salt bridges: L:K.57 pi-Stacking: J:W.38, J:W.38, J:W.38, J:W.38 5GP.15: 2 residues within 4Å: Chain N: W.38 Chain P: K.57 6 PLIP interactions: 4 interactions with chain N, 2 interactions with chain P pi-Stacking: N:W.38, N:W.38, N:W.38, N:W.38 Hydrogen bonds: P:K.57 Salt bridges: P:K.57 5GP.19: 2 residues within 4Å: Chain R: W.38 Chain T: K.57 6 PLIP interactions: 4 interactions with chain R, 2 interactions with chain T pi-Stacking: R:W.38, R:W.38, R:W.38, R:W.38 Hydrogen bonds: T:K.57 Salt bridges: T:K.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiao, C. et al., The crystal structure of coxsackievirus a21 and its interaction with icam-1. Structure (2005)

Release Date

2005-08-02

Peptides

Human COXSACKIEVIRUS A21: AEIMQ
Human COXSACKIEVIRUS A21: BFJNR
Human coxsackievirus A21: CGKOS
Human coxsackievirus A21: DHLPT

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

E
1

I
1

M
1

Q
1

B
2

F
2

J
2

N
2

R
2

C
3

G
3

K
3

O
3

S
3

D
4

H
4

L
4

P
4

T
4

Human COXSACKIEVIRUS A21

Human COXSACKIEVIRUS A21

Human coxsackievirus A21

Human coxsackievirus A21

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