SMTL ID : 7tqt.1

Coxsackievirus A21 capsid subdomain in complex with mouse polyclonal antibody pAbC-5

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-5-5-5-5-mer

Ligands

5 x MYR: MYRISTIC ACID(Non-covalent)

MYR.1: 9 residues within 4Å: Chain C: Y.107, L.127, Y.154, M.189, I.191, Y.200, S.201, H.202, F.232 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:Y.107, C:L.127, C:Y.154, C:Y.154, C:Y.154, C:Y.154, C:I.191, C:Y.200, C:F.232, C:F.232, C:F.232 Hydrogen bonds: C:Y.107 Salt bridges: C:H.202 MYR.2: 12 residues within 4Å: Chain G: I.105, Y.107, F.125, L.127, Y.154, P.176, M.189, I.191, Y.200, H.202, F.232 Chain I: A.24 12 PLIP interactions: 11 interactions with chain G, 1 interactions with chain I Hydrophobic interactions: G:I.105, G:L.127, G:Y.154, G:Y.154, G:Y.154, G:Y.154, G:P.176, G:I.191, G:Y.200, G:F.232, I:A.24 Salt bridges: G:H.202 MYR.3: 13 residues within 4Å: Chain K: I.105, Y.107, F.125, I.152, Y.154, P.176, S.177, M.189, I.191, V.194, Y.200, F.232, L.235 12 PLIP interactions: 12 interactions with chain K Hydrophobic interactions: K:I.105, K:Y.154, K:Y.154, K:I.191, K:I.191, K:V.194, K:Y.200, K:F.232, K:F.232, K:F.232, K:F.232, K:L.235 MYR.4: 10 residues within 4Å: Chain O: Y.107, F.125, M.129, Y.154, M.189, I.191, Y.200, H.202, F.232, L.235 11 PLIP interactions: 11 interactions with chain O Hydrophobic interactions: O:Y.107, O:Y.154, O:Y.154, O:Y.154, O:I.191, O:I.191, O:Y.200, O:F.232, O:F.232, O:L.235 Salt bridges: O:H.202 MYR.5: 14 residues within 4Å: Chain S: I.105, Y.107, S.123, F.125, L.127, M.129, Y.154, P.176, M.189, I.191, V.194, Y.200, H.202, F.232 15 PLIP interactions: 15 interactions with chain S Hydrophobic interactions: S:F.125, S:L.127, S:Y.154, S:Y.154, S:Y.154, S:P.176, S:I.191, S:I.191, S:Y.200, S:Y.200, S:F.232, S:F.232 Hydrogen bonds: S:Y.107, S:S.123 Salt bridges: S:H.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Antanasijevic, A. et al., High-resolution structural analysis of enterovirus-reactive polyclonal antibodies in complex with whole virions. Pnas Nexus (2022)

Release Date

2023-01-04

Peptides

pAbC-5 light chain: A
pAbC-5 heavy chain: B
VP1: CGKOS
VP2: DHLPT
VP3: EIMQU
VP4: FJNRV

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
a

G
e

K
i

O
m

S
q

D
b

H
f

L
j

P
n

T
r

E
c

I
g

M
k

Q
o

U
s

F
d

J
h

N
l

R
p

V
t

pAbC-5 light chain

pAbC-5 heavy chain

VP1

VP2

VP3

VP4

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