SMTL ID : 1z7z.1 (3 other biounits)

Cryo-em structure of human coxsackievirus A21 complexed with five domain icam-1kilifi

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 8.00 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x LEU- ILE- GLY- ARG- THR: human coxsackievirus A21(Non-covalent)

LEU-ILE-GLY-ARG-THR.1: 8 residues within 4Å: Chain A: I.84, S.86, L.87, T.88, K.97, K.98, F.100, N.101 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.84 Hydrogen bonds: A:S.86, A:S.86, A:T.88, A:T.88, A:K.98

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.2: 3 residues within 4Å: Chain E: N.103, T.145, L.147 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:L.147 Hydrogen bonds: E:T.145, E:T.145, E:L.147 NAG.3: 4 residues within 4Å: Chain E: A.117, N.118, P.167, Q.168 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:P.167 Hydrogen bonds: E:N.118 NAG.4: 3 residues within 4Å: Chain E: G.126, E.127, N.156 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.156 NAG.5: 7 residues within 4Å: Chain E: T.85, P.86, E.87, F.173, E.174, N.175 Ligands: NAG.6 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:P.86, E:N.175 NAG.6: 4 residues within 4Å: Chain E: Y.83, W.84, T.85 Ligands: NAG.5 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:Y.83 Hydrogen bonds: E:T.85 NAG.7: 2 residues within 4Å: Chain E: G.239, N.240 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:N.240 NAG.8: 3 residues within 4Å: Chain E: W.97, P.99, N.269 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:P.99 Hydrogen bonds: E:W.97, E:W.97, E:N.269 NAG.9: 1 residues within 4Å: Chain E: N.358 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiao, C. et al., The crystal structure of coxsackievirus a21 and its interaction with icam-1. Structure (2005)

Release Date

2005-08-02

Peptides

human coxsackievirus A21: A
human coxsackievirus A21: B
human coxsackievirus A21: C
human coxsackievirus A21: D
Intercellular adhesion molecule-1: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
2

C
3

D
4

E
I

human coxsackievirus A21

human coxsackievirus A21

human coxsackievirus A21

human coxsackievirus A21

Intercellular adhesion molecule-1

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