SMTL ID : 2a7g.1

On the Routine Use of Soft X-Rays in Macromolecular Crystallography, Part III- The Optimal Data Collection Wavelength

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.142, H.146, Y.157, E.166 Ligands: ACY.10 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.142, A:H.146, A:E.166, A:E.166, ACY.10

6 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.2: 5 residues within 4Å: Chain A: E.177, N.183, D.185, E.190 Ligands: CA.4 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.177, A:N.183, A:D.185, A:E.190, H2O.2, H2O.2 CA.3: 3 residues within 4Å: Chain A: D.57, D.59, Q.61 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.57, A:Q.61, H2O.2, H2O.3, H2O.3 CA.4: 6 residues within 4Å: Chain A: D.138, E.177, D.185, E.187, E.190 Ligands: CA.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.138, A:E.177, A:E.177, A:D.185, A:E.190 CA.5: 4 residues within 4Å: Chain A: Y.193, T.194, I.197, D.200 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:Y.193, A:I.197, A:D.200, H2O.1, H2O.1 CA.6: 1 residues within 4Å: Chain A: Y.211 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:Y.211, H2O.6, H2O.7, H2O.7, H2O.7 CA.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.8: 1 residues within 4Å: Chain A: Y.66 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:Y.66 DMS.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.10: 9 residues within 4Å: Chain A: N.112, A.113, H.142, E.143, H.146, Y.157, E.166, H.231 Ligands: ZN.1 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:H.142, A:H.146, A:H.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mueller-Dieckmann, C. et al., On the routine use of soft X-rays in macromolecular crystallography. Part III. The optimal data-collection wavelength. Acta Crystallogr.,Sect.D (2005)

Release Date

2005-07-19

Peptides

thermolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

thermolysin

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