- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 6 x ACT: ACETATE ION(Non-functional Binders)
ACT.2: 7 residues within 4Å:- Chain A: A.245, V.248, E.249, K.267, I.268, A.271
- Ligands: NAD.1
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:E.249, A:A.271
ACT.6: 7 residues within 4Å:- Chain B: A.245, V.248, E.249, K.267, I.268, A.271
- Ligands: NAD.5
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:E.249, B:A.271
ACT.10: 7 residues within 4Å:- Chain C: A.245, V.248, E.249, K.267, I.268, A.271
- Ligands: NAD.9
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:E.249, C:A.271
ACT.14: 7 residues within 4Å:- Chain D: A.245, V.248, E.249, K.267, I.268, A.271
- Ligands: NAD.13
2 PLIP interactions:2 interactions with chain D- Hydrophobic interactions: D:E.249, D:A.271
ACT.18: 7 residues within 4Å:- Chain E: A.245, V.248, E.249, K.267, I.268, A.271
- Ligands: NAD.17
2 PLIP interactions:2 interactions with chain E- Hydrophobic interactions: E:E.249, E:A.271
ACT.22: 7 residues within 4Å:- Chain F: A.245, V.248, E.249, K.267, I.268, A.271
- Ligands: NAD.21
2 PLIP interactions:2 interactions with chain F- Hydrophobic interactions: F:E.249, F:A.271
- 6 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 3 residues within 4Å:- Chain A: R.462, H.465
- Chain B: K.510
Ligand excluded by PLIPCL.7: 3 residues within 4Å:- Chain A: K.510
- Chain B: R.462, H.465
Ligand excluded by PLIPCL.11: 3 residues within 4Å:- Chain C: R.462, H.465
- Chain D: K.510
Ligand excluded by PLIPCL.15: 3 residues within 4Å:- Chain C: K.510
- Chain D: R.462, H.465
Ligand excluded by PLIPCL.19: 3 residues within 4Å:- Chain E: R.462, H.465
- Chain F: K.510
Ligand excluded by PLIPCL.23: 3 residues within 4Å:- Chain E: K.510
- Chain F: R.462, H.465
Ligand excluded by PLIP- 3 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)
MRD.4: 7 residues within 4Å:- Chain A: F.6, Y.144, R.147, A.148, L.500
- Chain B: E.158, V.160
8 PLIP interactions:6 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:F.6, A:Y.144, A:R.147, A:A.148, A:L.500, B:V.160
- Water bridges: A:R.151
- Hydrogen bonds: B:E.158
MRD.12: 7 residues within 4Å:- Chain C: F.6, Y.144, R.147, A.148, L.500
- Chain D: E.158, V.160
8 PLIP interactions:6 interactions with chain C, 2 interactions with chain D- Hydrophobic interactions: C:F.6, C:Y.144, C:R.147, C:A.148, C:L.500, D:V.160
- Water bridges: C:R.151
- Hydrogen bonds: D:E.158
MRD.20: 7 residues within 4Å:- Chain E: F.6, Y.144, R.147, A.148, L.500
- Chain F: E.158, V.160
8 PLIP interactions:2 interactions with chain F, 6 interactions with chain E- Hydrophobic interactions: F:V.160, E:F.6, E:Y.144, E:R.147, E:A.148, E:L.500
- Hydrogen bonds: F:E.158
- Water bridges: E:R.151
- 3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.8: 6 residues within 4Å:- Chain A: E.158
- Chain B: F.6, Y.144, R.147, A.148, L.500
8 PLIP interactions:2 interactions with chain A, 6 interactions with chain B- Hydrogen bonds: A:E.158
- Water bridges: A:E.158, B:R.151
- Hydrophobic interactions: B:F.6, B:Y.144, B:R.147, B:A.148, B:L.500
MPD.16: 6 residues within 4Å:- Chain C: E.158
- Chain D: F.6, Y.144, R.147, A.148, L.500
8 PLIP interactions:6 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:F.6, D:Y.144, D:R.147, D:A.148, D:L.500
- Water bridges: D:R.151, C:E.158
- Hydrogen bonds: C:E.158
MPD.24: 6 residues within 4Å:- Chain E: E.158
- Chain F: F.6, Y.144, R.147, A.148, L.500
8 PLIP interactions:6 interactions with chain F, 2 interactions with chain E- Hydrophobic interactions: F:F.6, F:Y.144, F:R.147, F:A.148, F:L.500
- Water bridges: F:R.151, E:E.158
- Hydrogen bonds: E:E.158
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Inagaki, E. et al., Crystal Structure of Thermus Thermophilus Delta1-Pyrroline-5-Carboxylate Dehydrogenase. J.Mol.Biol. (2006)
- Release Date
- 2006-03-09
- Peptides
- 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 6 x ACT: ACETATE ION(Non-functional Binders)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- 3 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)
- 3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Inagaki, E. et al., Crystal Structure of Thermus Thermophilus Delta1-Pyrroline-5-Carboxylate Dehydrogenase. J.Mol.Biol. (2006)
- Release Date
- 2006-03-09
- Peptides
- 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B