SMTL ID : 2bno.1

The structure of Hydroxypropylphosphonic acid epoxidase from S. wedmorenis.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

8 x HG: MERCURY (II) ION(Non-covalent)

HG.1: 5 residues within 4Å: Chain A: P.91, C.107 Chain B: V.22, K.23 Ligands: HG.2 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:C.107, H2O.5, H2O.10 HG.2: 7 residues within 4Å: Chain A: P.91, I.92, L.93, Y.105, C.107 Chain B: K.23 Ligands: HG.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:P.91, A:C.107 HG.8: 5 residues within 4Å: Chain A: V.22, K.23 Chain B: P.91, C.107 Ligands: HG.9 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.107, H2O.2 HG.9: 6 residues within 4Å: Chain B: P.91, I.92, L.93, Y.105, C.107 Ligands: HG.8 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:P.91, B:C.107 HG.15: 5 residues within 4Å: Chain C: P.91, C.107 Chain D: V.22, K.23 Ligands: HG.16 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:C.107, H2O.23, H2O.27 HG.16: 7 residues within 4Å: Chain C: P.91, I.92, L.93, Y.105, C.107 Chain D: K.23 Ligands: HG.15 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:P.91, C:C.107 HG.22: 5 residues within 4Å: Chain C: V.22, K.23 Chain D: P.91, C.107 Ligands: HG.23 2 PLIP interactions: 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:C.107, H2O.19 HG.23: 6 residues within 4Å: Chain D: P.91, I.92, L.93, Y.105, C.107 Ligands: HG.22 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:P.91, D:C.107

4 x ZN: ZINC ION(Non-covalent)

ZN.3: 3 residues within 4Å: Chain A: H.138, E.142, H.180 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.142, A:H.180, H2O.8, H2O.8, H2O.8 ZN.10: 3 residues within 4Å: Chain B: H.138, E.142, H.180 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.138, B:E.142, B:H.180, H2O.18, H2O.18, H2O.18 ZN.17: 3 residues within 4Å: Chain C: H.138, E.142, H.180 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:E.142, C:H.180, H2O.26, H2O.26, H2O.26 ZN.24: 3 residues within 4Å: Chain D: H.138, E.142, H.180 6 PLIP interactions: 3 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:H.138, D:E.142, D:H.180, H2O.35, H2O.36, H2O.36

16 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: R.90, V.121, K.192 Chain C: F.145 Ligand excluded by PLIP SO4.5: 4 residues within 4Å: Chain A: A.114, P.115, S.116, L.117 Ligand excluded by PLIP SO4.6: 2 residues within 4Å: Chain A: Q.55, R.58 Ligand excluded by PLIP SO4.7: 3 residues within 4Å: Chain A: H.138, A.139 Chain B: Q.21 Ligand excluded by PLIP SO4.11: 3 residues within 4Å: Chain A: H.61 Chain B: D.77, K.112 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain A: D.17, Q.21 Chain B: H.138, A.139 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain B: A.114, P.115, S.116 Ligand excluded by PLIP SO4.14: 1 residues within 4Å: Chain B: K.186 Ligand excluded by PLIP SO4.18: 4 residues within 4Å: Chain A: F.145 Chain C: R.90, V.121, K.192 Ligand excluded by PLIP SO4.19: 4 residues within 4Å: Chain C: A.114, P.115, S.116, L.117 Ligand excluded by PLIP SO4.20: 2 residues within 4Å: Chain C: Q.55, R.58 Ligand excluded by PLIP SO4.21: 3 residues within 4Å: Chain C: H.138, A.139 Chain D: Q.21 Ligand excluded by PLIP SO4.25: 3 residues within 4Å: Chain C: H.61 Chain D: D.77, K.112 Ligand excluded by PLIP SO4.26: 4 residues within 4Å: Chain C: D.17, Q.21 Chain D: H.138, A.139 Ligand excluded by PLIP SO4.27: 3 residues within 4Å: Chain D: A.114, P.115, S.116 Ligand excluded by PLIP SO4.28: 1 residues within 4Å: Chain D: K.186 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mcluskey, K. et al., Structure and Reactivity of Hydroxypropylphosphonic Acid Epoxidase in Fosfomycin Biosynthesis by a Cation- and Flavin-Dependent Mechanism. Proc.Natl.Acad.Sci.USA (2005)

Release Date

2005-10-05

Peptides

EPOXIDASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

EPOXIDASE

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