- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.2: 4 residues within 4Å:- Chain A: D.2, F.3, N.5, N.154
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.2
- Water bridges: A:N.154
NAG-NAG.8: 4 residues within 4Å:- Chain B: D.2, F.3, N.5, N.154
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.2
- Water bridges: B:N.154
NAG-NAG.14: 4 residues within 4Å:- Chain C: D.2, F.3, N.5, N.154
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:D.2
- Water bridges: C:N.154
NAG-NAG.20: 4 residues within 4Å:- Chain D: D.2, F.3, N.5, N.154
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:D.2
- Water bridges: D:N.154
- 8 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)
SIA.3: 13 residues within 4Å:- Chain A: R.37, E.38, D.70, R.71, W.98, I.142, R.144, A.166, E.196, E.197, R.212, R.290, Y.324
19 PLIP interactions:19 interactions with chain A- Hydrophobic interactions: A:W.98, A:I.142, A:R.144
- Hydrogen bonds: A:E.38, A:D.70, A:D.70, A:R.71, A:R.144, A:E.197, A:R.212, A:R.212
- Water bridges: A:R.75, A:E.147, A:E.147, A:E.197, A:E.197
- Salt bridges: A:R.37, A:R.212, A:R.290
SIA.4: 9 residues within 4Å:- Chain A: S.286, A.288, S.289, S.291, N.318, T.319, D.320, W.321, K.352
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:W.321
- Hydrogen bonds: A:S.286, A:S.286, A:S.291, A:S.291, A:N.318, A:N.318, A:N.318, A:K.352
- Water bridges: A:A.288, A:A.288
SIA.9: 13 residues within 4Å:- Chain B: R.37, E.38, D.70, R.71, W.98, I.142, R.144, A.166, E.196, E.197, R.212, R.290, Y.324
19 PLIP interactions:19 interactions with chain B- Hydrophobic interactions: B:W.98, B:I.142, B:R.144
- Hydrogen bonds: B:E.38, B:D.70, B:D.70, B:R.71, B:R.144, B:E.197, B:R.212, B:R.212
- Water bridges: B:R.75, B:E.147, B:E.147, B:E.197, B:E.197
- Salt bridges: B:R.37, B:R.212, B:R.290
SIA.10: 9 residues within 4Å:- Chain B: S.286, A.288, S.289, S.291, N.318, T.319, D.320, W.321, K.352
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:W.321
- Hydrogen bonds: B:S.286, B:S.286, B:S.291, B:S.291, B:N.318, B:N.318, B:N.318, B:K.352
- Water bridges: B:A.288, B:A.288
SIA.15: 13 residues within 4Å:- Chain C: R.37, E.38, D.70, R.71, W.98, I.142, R.144, A.166, E.196, E.197, R.212, R.290, Y.324
19 PLIP interactions:19 interactions with chain C- Hydrophobic interactions: C:W.98, C:I.142, C:R.144
- Hydrogen bonds: C:E.38, C:D.70, C:D.70, C:R.71, C:R.144, C:E.197, C:R.212, C:R.212
- Water bridges: C:R.75, C:E.147, C:E.147, C:E.197, C:E.197
- Salt bridges: C:R.37, C:R.212, C:R.290
SIA.16: 9 residues within 4Å:- Chain C: S.286, A.288, S.289, S.291, N.318, T.319, D.320, W.321, K.352
11 PLIP interactions:11 interactions with chain C- Hydrophobic interactions: C:W.321
- Hydrogen bonds: C:S.286, C:S.286, C:S.291, C:S.291, C:N.318, C:N.318, C:N.318, C:K.352
- Water bridges: C:A.288, C:A.288
SIA.21: 13 residues within 4Å:- Chain D: R.37, E.38, D.70, R.71, W.98, I.142, R.144, A.166, E.196, E.197, R.212, R.290, Y.324
19 PLIP interactions:19 interactions with chain D- Hydrophobic interactions: D:W.98, D:I.142, D:R.144
- Hydrogen bonds: D:E.38, D:D.70, D:D.70, D:R.71, D:R.144, D:E.197, D:R.212, D:R.212
- Water bridges: D:R.75, D:E.147, D:E.147, D:E.197, D:E.197
- Salt bridges: D:R.37, D:R.212, D:R.290
SIA.22: 9 residues within 4Å:- Chain D: S.286, A.288, S.289, S.291, N.318, T.319, D.320, W.321, K.352
11 PLIP interactions:11 interactions with chain D- Hydrophobic interactions: D:W.321
- Hydrogen bonds: D:S.286, D:S.286, D:S.291, D:S.291, D:N.318, D:N.318, D:N.318, D:K.352
- Water bridges: D:A.288, D:A.288
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.5: 2 residues within 4Å:- Chain A: N.65, W.357
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.65, A:W.357
NAG.11: 2 residues within 4Å:- Chain B: N.65, W.357
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.65, B:W.357
NAG.17: 2 residues within 4Å:- Chain C: N.65, W.357
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.65, C:W.357
NAG.23: 2 residues within 4Å:- Chain D: N.65, W.357
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:N.65, D:W.357
- 4 x CA: CALCIUM ION(Non-covalent)
CA.6: 5 residues within 4Å:- Chain A: D.213, G.217, D.244, N.266, G.267
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.213, A:G.217, A:D.244, H2O.7, H2O.7
CA.12: 5 residues within 4Å:- Chain B: D.213, G.217, D.244, N.266, G.267
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.213, B:G.217, B:D.244, H2O.16, H2O.17
CA.18: 5 residues within 4Å:- Chain C: D.213, G.217, D.244, N.266, G.267
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.213, C:G.217, C:D.244, H2O.26, H2O.27
CA.24: 5 residues within 4Å:- Chain D: D.213, G.217, D.244, N.266, G.267
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.213, D:G.217, D:D.244, H2O.36, H2O.37
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rudino-Pinera, E. et al., The Crystal Structure of Influenza Type a Virus Neuraminidase of the N6 Subtype at 1.85 A Resolution. To be Published
- Release Date
- 2007-03-27
- Peptides
- NEURAMINIDASE SUBTYPE N9: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 8 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rudino-Pinera, E. et al., The Crystal Structure of Influenza Type a Virus Neuraminidase of the N6 Subtype at 1.85 A Resolution. To be Published
- Release Date
- 2007-03-27
- Peptides
- NEURAMINIDASE SUBTYPE N9: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A