SMTL ID : 4iut.2 (1 other biounit)

crystal structure of SHH1 SAWADEE domain in complex with H3K9me2 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.68, H.102, C.107, C.109 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.68, A:H.102, A:C.107, A:C.109

1 x CVM: CYMAL-4(Non-covalent)

CVM.2: 8 residues within 4Å: Chain A: F.6, F.22, V.52, K.53, V.56, R.57, E.58, R.132 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.6, A:F.22, A:F.22, A:V.52 Hydrogen bonds: A:E.58, A:R.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Law, J.A. et al., Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1. Nature (2013)

Release Date

2013-05-01

Peptides

SAWADEE HOMEODOMAIN HOMOLOG 1: A
Histone H3.2, H3(1-15)K9me3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

SAWADEE HOMEODOMAIN HOMOLOG 1

Histone H3.2, H3(1-15)K9me3

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