SMTL ID : 5ix1.1

Crystal structure of mouse Morc3 ATPase-CW cassette in complex with AMPPNP and H3K4me3 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-oligomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.408, C.411, C.430, C.441 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.408, A:C.411, A:C.430, A:C.441 ZN.4: 4 residues within 4Å: Chain B: C.408, C.411, C.430, C.441 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.408, B:C.411, B:C.430, B:C.441

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 20 residues within 4Å: Chain A: E.30, N.34, D.39, V.40, D.62, M.67, M.75, S.81, K.83, G.93, L.94, Y.95, G.96, N.97, G.98, F.99, K.100, T.189, K.353 Ligands: MG.3 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:D.39, A:D.62, A:F.80, A:S.81, A:L.94, A:Y.95, A:G.96, A:G.96, A:N.97, A:G.98, A:F.99, A:K.353, A:K.353 Water bridges: A:N.34, A:G.66, A:D.82 Salt bridges: A:K.83, A:K.100 ANP.5: 20 residues within 4Å: Chain B: E.30, N.34, D.39, V.40, D.62, M.67, M.75, S.81, K.83, G.93, L.94, Y.95, G.96, N.97, G.98, F.99, K.100, T.189, K.353 Ligands: MG.6 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:N.34, B:D.39, B:D.62, B:F.80, B:K.83, B:L.94, B:Y.95, B:G.96, B:N.97, B:G.98, B:F.99, B:T.189, B:K.353, B:K.353 Water bridges: B:G.66 Salt bridges: B:K.100

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: E.30, N.34, K.83 Ligands: ANP.2 No protein-ligand interaction detected (PLIP) MG.6: 3 residues within 4Å: Chain B: E.30, N.34 Ligands: ANP.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, S. et al., Mouse MORC3 is a GHKL ATPase that localizes to H3K4me3 marked chromatin. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-08-17

Peptides

MORC family CW-type zinc finger protein 3: AB
Peptide from Histone H3.1: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
P

D
Q

MORC family CW-type zinc finger protein 3

Peptide from Histone H3.1

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