SMTL ID : 6lqf.1

Crystal structure of Arabidopsis ARID5 ARID-PHD cassette in complex with H3K4me3 peptide and DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-1-1-mer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.14, C.16, D.32, Y.122, H.126 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.14, A:C.16, A:D.32, A:D.32, A:H.126 ZN.2: 4 residues within 4Å: Chain A: C.148, C.151, C.181, C.184 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.148, A:C.151, A:C.181, A:C.184 ZN.3: 4 residues within 4Å: Chain A: C.134, C.137, H.156, C.159 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.134, A:C.137, A:H.156, A:C.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, L.M. et al., Dual Recognition of H3K4me3 and DNA by the ISWI Component ARID5 Regulates the Floral Transition in Arabidopsis. Plant Cell (2020)

Release Date

2020-06-03

Peptides

AT-rich interactive domain-containing protein 4: A
15-mer peptide from Histone H3.2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
P

AT-rich interactive domain-containing protein 4

15-mer peptide from Histone H3.2

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